Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68490 145 / 1e-44 unknown protein AT1G13390 119 / 3e-34 unknown protein AT5G16110 108 / 4e-29 unknown protein AT3G02555 100 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034327 [exp] 201 / 8e-67 AT1G68490 149 / 1e-46 unknown protein Lus10009170 [exp] 134 / 6e-40 AT5G16110 160 / 7e-50 unknown protein Lus10028474 [exp] 133 / 9e-40 AT5G16110 160 / 8e-50 unknown protein Lus10033560 [exp] 93 / 5e-24 AT5G16110 136 / 3e-40 unknown protein Lus10017599 [exp] 83 / 3e-20 AT5G16110 137 / 8e-41 unknown protein Lus10027557 [exp] 72 / 5e-17 AT1G68490 64 / 3e-14 unknown protein Lus10027224 [exp] 56 / 8e-10 AT3G02555 84 / 2e-20 unknown protein Lus10038934 [exp] 46 / 1e-06 AT1G68490 71 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124400 [exp] 177 / 9e-57 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 175 / 5e-56 AT1G68490 150 / 3e-46 unknown protein Potri.017G114700 [exp] 137 / 4e-41 AT5G16110 139 / 4e-41 unknown protein Potri.004G099800 [exp] 128 / 8e-38 AT5G16110 135 / 7e-40 unknown protein Potri.015G047100 [exp] 120 / 2e-34 AT1G68490 116 / 4e-33 unknown protein Potri.012G056500 [exp] 104 / 2e-28 AT1G68490 119 / 2e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041444 pacid=23146594 polypeptide=Lus10041444 locus=Lus10041444.g ID=Lus10041444.BGIv1.0 annot-version=v1.0 ATGAATCACTATGTGATCCAGCAAAACGCTTTCTCGAGGAGGGACGAGGTTCGCAGGAGCTCCGCCGAATCTGAGCGAAAGCAGTCGGTGGTTTGTCCTA AACCACGGCGTTTCAGTCTGTTTAGCGATACTGCCAACGACCACCCGGTTCGATCTCTCCGATGGCAGCTTAGCCACCAGACTGAGACTTGTGATTCAAA AGGAGGAAACGATCTTCTGGACATCATCCTCACCAAGGGTGATTACAGTGGCAGTGGTGCGGATCAGTCGTACCAACCATTATCGTCGTCGCCCCCTTTT TTCAGCGGGTCGCCGCCGAGCAGAGTAGCTAACCCACTAATTCGGGATGCTCGGTTTGGGGAGGAGAAGCTGTCCCATTTCTCACCGATCTCTGGTGTCC CACCTCTGTCAGGCCTATCATCATCATCTCCGACTTCCACGACCTCTGGAGGTAGGAAAGGAGGATGCGTCCGGGCAAATTTTGGGGACAACCCGACGGT GAGGGTGGAAGGGTTCGATTGCCTTGACAGGGATAGCAGAAACTGCAGCATCCCTGCTCTGGCATAG
AA sequence Show only first row Show all	>Lus10041444 pacid=23146594 polypeptide=Lus10041444 locus=Lus10041444.g ID=Lus10041444.BGIv1.0 annot-version=v1.0 MNHYVIQQNAFSRRDEVRRSSAESERKQSVVCPKPRRFSLFSDTANDHPVRSLRWQLSHQTETCDSKGGNDLLDIILTKGDYSGSGADQSYQPLSSSPPF FSGSPPSRVANPLIRDARFGEEKLSHFSPISGVPPLSGLSSSSPTSTTSGGRKGGCVRANFGDNPTVRVEGFDCLDRDSRNCSIPALA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68490			unknown protein		Lus10041444 [exp]	0	1
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	9.3	0.6584
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	12.2	0.6423
AT1G17500			ATPase E1-E2 type family prote...		Lus10006017 [exp]	15.8	0.6291
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	27.0	0.6353
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	49.5	0.6280
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	50.5	0.5967
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	69.3	0.6122
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	69.7	0.5886
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	87.1	0.5789
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	100.7	0.5836

Compare expression of checked genes

Lus10041444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.