Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60540 360 / 7e-127 EMB2407, ATPDX2, PDX2 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034326 [exp] 462 / 2e-167 AT5G60540 389 / 2e-138 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012700 [exp] 397 / 1e-141 AT5G60540 386 / 4e-137 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01174 [flax] [poplar] SNO SNO glutamine amidotransferase family
Representative CDS sequence Show only first row Show all	>Lus10041445 pacid=23147056 polypeptide=Lus10041445 locus=Lus10041445.g ID=Lus10041445.BGIv1.0 annot-version=v1.0 ATGGTTGTCGGCGTCCTTGCGTTACAGGGTTCTTTTAACGAACACATTTCAGCTCTCAGCAGATTGGGAGTAAAGGGTGTGGAAATTAGGAAGCCAGAGC AGCTTCAAAATATTAGTTCTCTCATCATTCCTGGTGGCGAAAGTACCACCATGGCTAAGCTTGCTGCGTTCCACAACTTGTTTCCTGCTCTGCGAGAGTT TGTTAAGATGGGAAAACCTGTTTGGGGCACTTGTGCTGGTCTTATCTTCTTGGCAGAGAAGGCAGTGGGGCAGAAAACTGGAGGTCAGGAACTGGTTGGT GGACTAGATTGCACTGTACACAGGAATTACTTTGGCAGTCAGATTCAAAGCTTCGAGGCAGAGCTTTCGATCCCAAAAATCGTGTCTCAGGAAGGTGGTC CTGAAACATTCCGAGGTGTCTTTATTCGTGCTCCTGCAGTCCTTGAAGTTGGCCCAGCAGTTGAAGTATTGGCTGAATATCCGGTACCCTCTGCTAATGT ATTGTATTCAAGCTCTGCTGTCCAAATTCAAGAGGAAAATGCAGTTCCTGAGAAGAAAGTGGTTGTGGCCGTGAAGCAGGGGAATATCCTGGGGACTGCC TTCCACCCTGAGCTTACTGCAGATACTCGATGGCACAGCTATTTCTTGAAGATGGGAAATGATGGTGGAGAAAGATCCTCAAGCACCTTGGTTCCTCTTT TGGGAGGATTAGACGAAAAGCCAAGGATTGAGCTCCCTGTATACCGTTAG
AA sequence Show only first row Show all	>Lus10041445 pacid=23147056 polypeptide=Lus10041445 locus=Lus10041445.g ID=Lus10041445.BGIv1.0 annot-version=v1.0 MVVGVLALQGSFNEHISALSRLGVKGVEIRKPEQLQNISSLIIPGGESTTMAKLAAFHNLFPALREFVKMGKPVWGTCAGLIFLAEKAVGQKTGGQELVG GLDCTVHRNYFGSQIQSFEAELSIPKIVSQEGGPETFRGVFIRAPAVLEVGPAVEVLAEYPVPSANVLYSSSAVQIQEENAVPEKKVVVAVKQGNILGTA FHPELTADTRWHSYFLKMGNDGGERSSSTLVPLLGGLDEKPRIELPVYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020849 [exp]	6.0	0.8246
AT5G12470			Protein of unknown function (D...		Lus10019744 [exp]	8.6	0.8032
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	9.9	0.8704
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	13.4	0.8086
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	16.2	0.8425
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	17.1	0.8586
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	18.0	0.8486
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	18.3	0.8255
AT2G41150			unknown protein		Lus10008860 [exp]	21.3	0.8038
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	21.4	0.8535

Compare expression of checked genes

Lus10041445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.