Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70670 178 / 2e-57 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 168 / 1e-53 Caleosin-related family protein (.1) AT1G23240 159 / 6e-50 Caleosin-related family protein (.1.2.3) AT1G23250 124 / 4e-36 Caleosin-related family protein (.1) AT2G33380 124 / 7e-36 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT5G55240 123 / 2e-35 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT4G26740 122 / 5e-35 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G29560 103 / 4e-28 caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034325 [exp] 244 / 2e-83 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10014588 [exp] 194 / 6e-64 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10023732 [exp] 127 / 4e-37 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10011775 [exp] 125 / 3e-36 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107900 [exp] 209 / 9e-70 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.008G133800 [exp] 209 / 2e-69 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G066600 [exp] 122 / 3e-35 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10041446 pacid=23146950 polypeptide=Lus10041446 locus=Lus10041446.g ID=Lus10041446.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCTCTAAGCACGAACGACGACAAGCAACTAAGTGGTCTTCGGGCAATCGGGGCAGGCATTCTATTATCGGCAGGAGGCGCCATCTTCATCA ACCTTGGCCTCAGCGGGAAGACCCGACCGGGAAAGTTTCCGTCTCCTTTGTTTCCAATTGAAATTAAGAATATTCAAAGAGGTAAACATGGGAGTGACTC TGGTGTTTATGACTCCGAGGGAAGGTTTGTTCCGGAAAAGTTTGAAGAGATTTTTGCCAAGCATGCGAAGATGAATCGGCATGCCTTAACTTCAGAGGAA CTTGGAGAGATGTTGAAACATAATCGAGAACCCAAAAATTATGGAGGATGGTTGGCTAGCTATTCAGAATGGAAAATACTGTTCAAGCTGGGGAAGGACA AGAACGGACTGCTGCACAAAGATACGATTCGAGCTGTATACGACGGAAGCCTTTTTGAACATATGGAGAATGAGAGGGCATTATCAAAGAAACCCTAA
AA sequence Show only first row Show all	>Lus10041446 pacid=23146950 polypeptide=Lus10041446 locus=Lus10041446.g ID=Lus10041446.BGIv1.0 annot-version=v1.0 MASALSTNDDKQLSGLRAIGAGILLSAGGAIFINLGLSGKTRPGKFPSPLFPIEIKNIQRGKHGSDSGVYDSEGRFVPEKFEEIFAKHAKMNRHALTSEE LGEMLKHNREPKNYGGWLASYSEWKILFKLGKDKNGLLHKDTIRAVYDGSLFEHMENERALSKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	2.2	0.9393
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	3.3	0.8826
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	4.2	0.9140
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	4.6	0.9075
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	5.1	0.9236
					Lus10000510 [exp]	6.3	0.8923
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	6.7	0.9127
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	6.9	0.9140
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	7.2	0.8762
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	7.7	0.8717

Compare expression of checked genes

Lus10041446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.