Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13380 205 / 1e-67 Protein of unknown function (DUF1218) (.1) AT4G27435 125 / 2e-36 Protein of unknown function (DUF1218) (.1) AT3G15480 114 / 5e-32 Protein of unknown function (DUF1218) (.1) AT1G61065 112 / 2e-31 Protein of unknown function (DUF1218) (.1) AT1G52910 104 / 2e-28 Protein of unknown function (DUF1218) (.1) AT1G68220 94 / 4e-24 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034324 [exp] 259 / 4e-89 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 120 / 1e-34 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 113 / 2e-31 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 113 / 2e-31 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 108 / 2e-29 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 107 / 3e-27 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10011208 [exp] 81 / 1e-19 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 47 / 2e-06 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124800 [exp] 226 / 5e-76 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 221 / 4e-74 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 121 / 9e-35 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 120 / 3e-34 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 112 / 5e-31 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 106 / 9e-29 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 89 / 2e-22 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 58 / 1e-10 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10041447 pacid=23146785 polypeptide=Lus10041447 locus=Lus10041447.g ID=Lus10041447.BGIv1.0 annot-version=v1.0 ATGGGCGAAGGCAGAGGCTCCACTTTGGTTCACCTTTTGGCGGTGCTTCTCTGCCTCGTTGCTTTCGGCTTTGCAGTTGCTGCCGAGAGACGACGGAGTG TTGGACATACAGAGATTGATGTAACTAATCGGACATACTGTGTATACAACTCTGATGTTGCAACAGGCTATGGAGTAGGTGCTTTCTTGTTTCTTCTTTC AAGTGAATCACTGCTGATGGGTGTAACAAAATGTATGTGCTTCGGTAGACCCCTTACTCCTGGTGGTGATCGAGCATGGTCAATCATATACTTTATCTCT TCGTGGCTGACTTTTCTCGTTGCGGAAGCATGTCTAATTGCCGGTGCAACGAAAAACGCATATCACACGAAGTATCGTGGAATGATCTTAGCTCAAAACT TCTCATGTGAATCATTGCGGAAAGGCGTTTTCATAGCTGGAGCCGTGTTTGTGGTTGCCACAATGATCCTCAACGTCTATTATTACATGTATTTCTCCAA GGCTACCTCAAGCCATGCTTCTAAGAAGACAAATCGCACGAGTTCCACCGTTGGGATGGCTGGGTATGCTTAG
AA sequence Show only first row Show all	>Lus10041447 pacid=23146785 polypeptide=Lus10041447 locus=Lus10041447.g ID=Lus10041447.BGIv1.0 annot-version=v1.0 MGEGRGSTLVHLLAVLLCLVAFGFAVAAERRRSVGHTEIDVTNRTYCVYNSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLTPGGDRAWSIIYFIS SWLTFLVAEACLIAGATKNAYHTKYRGMILAQNFSCESLRKGVFIAGAVFVVATMILNVYYYMYFSKATSSHASKKTNRTSSTVGMAGYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	0	1
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10016849 [exp]	1.4	0.8075
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10039661 [exp]	4.1	0.8136
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	8.9	0.7802
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	12.7	0.7803
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	14.1	0.7759
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	15.5	0.7680
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10014804 [exp]	17.7	0.6544
AT3G57400			unknown protein		Lus10018074 [exp]	18.3	0.7544
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	19.1	0.7566
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	22.4	0.7626

Compare expression of checked genes

Lus10041447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.