Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54830 1212 / 0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT3G61750 86 / 2e-17 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 73 / 3e-13 Auxin-responsive family protein (.1) AT3G07570 71 / 2e-12 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G47530 67 / 2e-11 Auxin-responsive family protein (.1) AT2G04850 67 / 2e-11 Auxin-responsive family protein (.1) AT4G12980 64 / 2e-10 Auxin-responsive family protein (.1) AT3G25290 63 / 6e-10 Auxin-responsive family protein (.1.2) AT5G35735 62 / 1e-09 Auxin-responsive family protein (.1) AT3G59070 61 / 3e-09 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034323 [exp] 1967 / 0 AT5G54830 1207 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Lus10016080 [exp] 81 / 7e-16 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 78 / 6e-15 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001162 [exp] 77 / 1e-14 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 76 / 6e-14 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10012625 [exp] 71 / 3e-12 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10010120 [exp] 67 / 1e-11 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10017564 [exp] 66 / 9e-11 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 64 / 3e-10 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262300 [exp] 1405 / 0 AT5G54830 1182 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Potri.018G021000 [exp] 1382 / 0 AT5G54830 1197 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Potri.002G222600 [exp] 96 / 1e-20 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 84 / 7e-17 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.014G098700 [exp] 75 / 9e-14 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.002G222700 [exp] 73 / 3e-13 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 71 / 1e-12 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.014G162000 [exp] 68 / 1e-11 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.014G197500 [exp] 66 / 7e-11 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.019G095800 [exp] 62 / 8e-10 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0559 [flax] [poplar] PF10517 [flax] [poplar] DM13 Electron transfer DM13 CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10041448 pacid=23146666 polypeptide=Lus10041448 locus=Lus10041448.g ID=Lus10041448.BGIv1.0 annot-version=v1.0 ATGAGTAGCTTGGATGCAAGGCTTCAAGCTAGATCGGAGGACAAGGTGCTCTGTAGCATAAATAGATCAGATGTTGTGTCTCGTGATATCTCAAGAATGC CTGGCAAGTTGGAGGAGAACATTAAAAGCATAGACCAGCTACCTGCGATGGCGTCTGTTGGCGATGATGATCTTGCTGGTGAAGAAGAATCATCATCAGG AAGTCAGACTGGGTTAAAGTTCTACCAACAGAGATATCGTGGTAACCTTTCCTTGCAAACCACCTTCCAAAGTTTATTGTTGACGAGGTCTCTGATTAGT CTGTTCTTTCTTGGTTGCCTTGCCGATTCTGGTCAGTCTTGTTCCAAAACAAGCTCTTTCGTTGGGTTTGAATCCCAATTCTATATGTTGCAGCATCAAC TCCGTGGTGTGATGACCATTGTTGATGACTGCTCATTTAATGTCTCCCAATTTGACATGTTATCTGGCTTGGACGTCCACTGGTGGGGAGCAAGTTCTGT AGATTTTGTTAACATGACCAAGGGCTTTGTGATCTCCGATCAGAAGCTTAATGAGACGTATAAAAATTCATCTTTTGCTGTTAAACTGAGGAAAAATGTC ACCTGGGAACAGATTCAAGTGTTTTCTGTGTGGGATATTCCCTCAGCTTCTGATTTTGGACACGTTATTATCAAGAATGATTCCACGCTGGAGTCCAGAT TAAGCCCTGGTTTGCCTCCAACTCCATCTGAGAATAACACTAGTCCAGGGAAAGAGAAAGGTCAGATTTTAACAGCGCCTACGATGTTTGACAATTGTAA GGTCTTGTCTAAAGACTACAGAGTAAGATGGAGTTTAAGCGCCAACAAAGATTTTGTTGACATAGGACTGGAAGCAGCCATAGGGATCCAGAATTATATG GCTTTCGGATGGGCCAATGGGTCAAATTCTGACCTAATGATTGGTGCTGATGTATCTGTGGCTGGATTCAGTGAGGAAGGGTGGCCTTTTGCTGATGATT TTTTCATTACAAAGTATATTGAATGTACTATAGACAAGGACGGTTCAGCTACTGGGGTGTGTCCTGATGCGATATATGAAGGATCAGATCCAGTTGGCTT GGTGAACAATACTCAGACCATTTATGGCCACAGGAAAGATGGTGTGTCATTTGTCAGGTACAGGAGGCCATTGATTTCTGCAGATAAGAAATATGATTTG CCTGTGAATTATACAGAAAAAATGAACGTAATCTGGGCTGTAGGCTTGCTGAGGCCACCAGATTCTTTTATGCCGTACTATCTGCCCCTTGACCACGGAG GTCCAGCTGCTGTGGCATATGGACATTTGTTGCTTAATGTATCCGAACATGTGAATGATTGTGTAGGGCCATTGGATGCTGCAGACAAGGAAGATCAGGA TTTGATCTTTGCTGATGGAAACGTGCCTCTAGTAGTTACTTCTGGGCCTGCTTTACATTATCCTAATTCTCCCAACCCTTCTAAGGTGTTCTACATAAAC AAGAAGGAGGCACCAGTTTTGAGAGTTGAGAGAGGTGTACCAGTGACGTTCTCTGTGCAAGCTGGACATGACGTTGCATTGTATATAACTTCAGACTTGC TTGGTGGGAATGCCACATTGAGGAATGAGACAGAAACCATATATGCAGGGGGGCCCGAGGCAGAAGGTGTTCAAGCTGATCCAATGGAATTAGTTTGGGC ACCAGACAGAAATACCCCGGATCAAGTATACTATCAGTCATTGTATCAGCAGAAAATGGGATGGAGGGTTCAAGTTGTCGATGGGGGTCTTTCTGATATG TACAATAACAGTGTTTTCTTGGATGATCAGCAAGTAACCTTCTTTTGGACATTGTCAGATGAGACTATATCCGTTGCAGCTCGAGGGGAGAAAAAAAGTG GATACGTTGCTATAGGATTTGGTACTGGGATGGTTAACAGCTTTGCTTATGTGGGCTGGATAGATGATGAAGCTAAAGGGCATGTAAACACATACTGGAT CGATGGAATGGATGCCTTGAGCGTGCATCCAACAAATGAAAATTTGACTTACGTAAGGTGCAAATCTGAAAATGGCATCATTACCTTGGAGTTCACTAGG CTTCTGAAACCTCCATGTCCTCACAGAGGAAATATAGAGTGCCAGAATATAATTGATCCAACCAGTCCTCTTAAAGTTGTGTGGGCAATGGGTGCTAGTT GGTCCGATGAACATTTGAGCGAGAAAAATATGCATTCAGCAACAAGTCAAAGGCCTGTAAACGTGTTGCTACTGGGTGGATCTACAGAAGCAGAGCAAGA TATACGACCTGTATTGGCTGTGCATGGATTTATGATGTTCCTTGCTTGGGGTATTTTGCTTCCTGGAGGTGTTCTATCTGCTAGATATTTAAAGCATCTG AAAGGTGATGGCTGGTACCAGATTCATGTATACTTGCAATATTCAGGTTTGTCCATTGTCTTGCTCGGCTTTCTGTTTGCGGTAGCCGAGCTTCGAGGGC TATATGTAAGTTCCCTGCACGTTAAATTTGGGCTTACCGCTATATTTTTAGCGTGCGCACAGCCCGTAAATGCTTTCATGAGGCCGAAAAAACCAGGTAA CGGAGAAGTCATTACTAAGAAAAGGCTTATGTGGGAGTATTTCCATGTTATAGTGGGCAGGTCAGCCATCATTGCTGGAATTGTAGCTGTATTCACAGGA ATGAAACATATGGGAGACAGATATGGAGGGGAAAACGTTCATGGATATATTTGGGCTCTCATTGCGTGGTTCCTGATGGGATCACTGATGATACTGTATC TTGAACACAAAGAAAGGCAGAGAAGGAGAGACAGAATGCCCGGGAGAAGTAGCAGTAGTAGTAATTGGGTGTTGGGTAACACCGAAGAAGATGATTCGGT CGATCTCCTCAACTCGACGAGAGCCTCTGACCAAATGGATTTGCGAGACTCGGGGAGAATGGAATTGCAGTTAGAACCTTTGAACAGATAG
AA sequence Show only first row Show all	>Lus10041448 pacid=23146666 polypeptide=Lus10041448 locus=Lus10041448.g ID=Lus10041448.BGIv1.0 annot-version=v1.0 MSSLDARLQARSEDKVLCSINRSDVVSRDISRMPGKLEENIKSIDQLPAMASVGDDDLAGEEESSSGSQTGLKFYQQRYRGNLSLQTTFQSLLLTRSLIS LFFLGCLADSGQSCSKTSSFVGFESQFYMLQHQLRGVMTIVDDCSFNVSQFDMLSGLDVHWWGASSVDFVNMTKGFVISDQKLNETYKNSSFAVKLRKNV TWEQIQVFSVWDIPSASDFGHVIIKNDSTLESRLSPGLPPTPSENNTSPGKEKGQILTAPTMFDNCKVLSKDYRVRWSLSANKDFVDIGLEAAIGIQNYM AFGWANGSNSDLMIGADVSVAGFSEEGWPFADDFFITKYIECTIDKDGSATGVCPDAIYEGSDPVGLVNNTQTIYGHRKDGVSFVRYRRPLISADKKYDL PVNYTEKMNVIWAVGLLRPPDSFMPYYLPLDHGGPAAVAYGHLLLNVSEHVNDCVGPLDAADKEDQDLIFADGNVPLVVTSGPALHYPNSPNPSKVFYIN KKEAPVLRVERGVPVTFSVQAGHDVALYITSDLLGGNATLRNETETIYAGGPEAEGVQADPMELVWAPDRNTPDQVYYQSLYQQKMGWRVQVVDGGLSDM YNNSVFLDDQQVTFFWTLSDETISVAARGEKKSGYVAIGFGTGMVNSFAYVGWIDDEAKGHVNTYWIDGMDALSVHPTNENLTYVRCKSENGIITLEFTR LLKPPCPHRGNIECQNIIDPTSPLKVVWAMGASWSDEHLSEKNMHSATSQRPVNVLLLGGSTEAEQDIRPVLAVHGFMMFLAWGILLPGGVLSARYLKHL KGDGWYQIHVYLQYSGLSIVLLGFLFAVAELRGLYVSSLHVKFGLTAIFLACAQPVNAFMRPKKPGNGEVITKKRLMWEYFHVIVGRSAIIAGIVAVFTG MKHMGDRYGGENVHGYIWALIAWFLMGSLMILYLEHKERQRRRDRMPGRSSSSSNWVLGNTEEDDSVDLLNSTRASDQMDLRDSGRMELQLEPLNR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	0	1
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	1.0	0.8905
AT1G69430			unknown protein		Lus10037135 [exp]	3.9	0.8743
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	4.6	0.8561
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	6.3	0.8777
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	8.1	0.8658
AT3G19870			unknown protein		Lus10012903 [exp]	9.2	0.8690
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	11.0	0.8554
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	15.3	0.8689
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10009686 [exp]	16.6	0.7719
AT3G58050			unknown protein		Lus10029299 [exp]	18.0	0.8395

Compare expression of checked genes

Lus10041448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.