Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25440 251 / 1e-78 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 233 / 5e-72 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G73870 115 / 4e-28 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G49130 83 / 2e-17 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT5G57180 73 / 1e-13 CIA2 chloroplast import apparatus 2 (.1.2.3) AT5G15840 71 / 2e-13 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT1G07050 66 / 3e-12 CCT motif family protein (.1) AT4G25990 68 / 5e-12 CIL CCT motif family protein (.1.2) AT5G14370 64 / 5e-11 CCT motif family protein (.1) AT5G15850 64 / 7e-11 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034322 [exp] 591 / 0 AT1G25440 213 / 1e-64 B-box type zinc finger protein with CCT domain (.1) Lus10022311 [exp] 66 / 3e-11 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10014886 [exp] 62 / 6e-10 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10020012 [exp] 61 / 1e-09 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10015097 [exp] 54 / 1e-08 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 54 / 1e-08 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10026238 [exp] 56 / 2e-08 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 55 / 2e-08 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10039694 [exp] 53 / 3e-08 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120400 [exp] 347 / 6e-116 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 337 / 1e-111 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.015G054600 [exp] 250 / 2e-78 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.001G281700 [exp] 68 / 6e-13 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.006G075200 [exp] 68 / 4e-12 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.018G142100 [exp] 67 / 8e-12 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.001G339200 [exp] 66 / 1e-11 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.017G107500 [exp] 59 / 3e-09 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 58 / 7e-09 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.009G077100 [exp] 56 / 7e-09 AT1G07050 119 / 3e-34 CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10041449 pacid=23147044 polypeptide=Lus10041449 locus=Lus10041449.g ID=Lus10041449.BGIv1.0 annot-version=v1.0 ATGATTTCGAGCAAGGCTCATGGCCACGTGGCAAGCGCTGTCGGGGGGAAAACCGCCAGAGCCTGCGACAGCTGCATCAGGAAACGAGCCAGGTGGTACT GTGCTGCCGACGACGCTTTCCTCTGCCAGTCTTGCGATTCCTCCGTCCATTCCGCTAACCCCTTGGCCCGCCGCCATGAGAGGGTCCGTTTGAAGACCGC ATCTCTCAAATCTCTGTCTGTCGACACTACCAATTCATCCAACGGTGGTTCTGGATCTGTGATTCAGCCGTCTTGGGTGCGCGGGGTCACCAAGAAGGCA CGCACACCGCGCCCCAATAACAACATCAACAAAACGACGTCGTCCTCGTCACCTAATTCCACCGCGCTGATGTTGAGGGTGCCGGGAGTCCCTCTTGTCC CCGAAGTCGGCTCCGACGAGATGTACAATGAGGAGGAGGAGGAAGAACACCAGCTGCTGTTCAGAGTCCCAATCTTTGATCCGATTGAACTCTGCGGCAA TAACAATAATTCTAACGACGACGACGCAATAATCCATCATCGCCACCAGCAGCAAACGACGTCGTCGATGGATTCGAGCTGCTTGCAGGGGCTGGTGCTG CCGTCGGACATGGATTTCGCGGAGTTCGCTGCTGACGTGGAGAGCTTGCTCGGGAGGGGGCTGGAGAACGAGTCGTTCGGGATGGAGGAGCTAGGGATTC TGAATTCGTGTAGTAAATTAGTAGATGATGATGACGAAAAATTGGTTAAGATGGAGAAGGAGGATCTGCAGGATTACGGAGGAATTGATTTGGAAATGGA GATGATGGCGAAAGAAGAAGAAGAGGCAGCTCCGTTCCAGCTGAGCTTCGAGTATGAAGAGGAGGATGAGGTGAAGAAAGGGGGAAGGGGTATAATAATT AGAGGAGAAGATGATTCCAAGGAGGAATTAGAAGATCAACATGATAGTACTACAGGGGATGGTGATAGTAGCATTAATGGCGATAAGAAGAGGAGGAGGA ACAACATTTTGTTGAGCCTTAATTACGAAGCTGTAATCACCGCTTGGTCTACCACTACTCACAGCGGCTCCTCTCCTTGGACTAACGGCCTCCGTCCTGA TTTCGACCTCAACGAATGCTGGCCCGATTGCCTGGGAGGGTGTGGGAGGGAGTTTATGCATCACCAGCAGCATCACAACCACGGGTACGAAGGTGGGTTT GCAGTGGGAGGGAATTCCGGGATGGGTGGGGGCGGAGACGGAGGAAGGGAGGCGAGGGTGTCGAGATACAGAGAGAAGAGGAGGACGAGGTTGTTCTCGA AGAAAATAAGGTACGAGGTGAGGAAGCTGAATGCAGAGAAAAGGCCTAGAATGAAAGGGAGTGCTGCGTGTACCCTACGAACAGAAAAGGAACCTGACTG A
AA sequence Show only first row Show all	>Lus10041449 pacid=23147044 polypeptide=Lus10041449 locus=Lus10041449.g ID=Lus10041449.BGIv1.0 annot-version=v1.0 MISSKAHGHVASAVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSSVHSANPLARRHERVRLKTASLKSLSVDTTNSSNGGSGSVIQPSWVRGVTKKA RTPRPNNNINKTTSSSSPNSTALMLRVPGVPLVPEVGSDEMYNEEEEEEHQLLFRVPIFDPIELCGNNNNSNDDDAIIHHRHQQQTTSSMDSSCLQGLVL PSDMDFAEFAADVESLLGRGLENESFGMEELGILNSCSKLVDDDDEKLVKMEKEDLQDYGGIDLEMEMMAKEEEEAAPFQLSFEYEEEDEVKKGGRGIII RGEDDSKEELEDQHDSTTGDGDSSINGDKKRRRNNILLSLNYEAVITAWSTTTHSGSSPWTNGLRPDFDLNECWPDCLGGCGREFMHHQQHHNHGYEGGF AVGGNSGMGGGGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGSAACTLRTEKEPD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	1.0	0.9467
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	1.4	0.9311
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	3.6	0.8711
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	4.2	0.8786
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	4.5	0.8785
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	5.5	0.9052
AT2G46940			unknown protein		Lus10009965 [exp]	5.7	0.8607
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	6.8	0.8518
					Lus10036703 [exp]	7.2	0.9043
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	7.7	0.8914

Compare expression of checked genes

Lus10041449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.