Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14750 62 / 6e-11 unknown protein AT2G30120 52 / 9e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034321 [exp] 440 / 6e-157 AT1G55170 89 / 3e-20 unknown protein Lus10015629 [exp] 104 / 1e-26 AT1G55170 236 / 2e-77 unknown protein Lus10015628 [exp] 102 / 3e-26 AT1G55170 211 / 3e-68 unknown protein Lus10037647 [exp] 103 / 5e-26 AT1G55170 233 / 6e-76 unknown protein Lus10030976 [exp] 65 / 7e-12 AT1G67170 294 / 1e-96 unknown protein Lus10035371 [exp] 62 / 6e-11 AT1G67170 284 / 2e-95 unknown protein Lus10042267 [exp] 54 / 4e-08 AT2G30120 157 / 2e-45 unknown protein Lus10026389 [exp] 52 / 2e-07 AT2G30120 159 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037900 [exp] 103 / 2e-26 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 64 / 7e-12 AT3G14750 297 / 6e-100 unknown protein Potri.001G281400 [exp] 63 / 2e-11 AT2G30120 161 / 4e-48 unknown protein Potri.009G076700 [exp] 61 / 1e-10 AT3G14750 173 / 8e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041450 pacid=23146639 polypeptide=Lus10041450 locus=Lus10041450.g ID=Lus10041450.BGIv1.0 annot-version=v1.0 ATGTCAAGGAGAAGGCGTAGGTCCGGCCAGTCTGATGGTTTCCAAGGTTATGAAGATGGTTCTTGGCATGACGAAAATAGATCAATGCCCCTGCACAATC ATCCTGCAGCTTTGGAAGAAGAACTTGATTTTCTTCATCAAGAAATGAGGAGGATCATGACTGAGAATGAGGCCATTGTCAATCATAACAGGGCTCTTCA AAGTGAAGTGACACGCAAATACGGTGAGATTGACAAATTGGAACAGATGATACCTCAACTCCAGGCTGAAAAGGAAACAGATATACGTGAACTAATCCAG ACAGGATTGAAGTTAGAAGCAGAGTTGCGGTCAAGGGAGCCTCTGAAGGTAGAGGTGAGGCTGTTAAGGGCAGAAGTTGAGCACTTGAATACATCCGTGG GCGACTTAACATCTTTCGCCAGCAGTTTAAGACAAGAGGTAGAACAAGTGGACGCTGAGAAAAGACAAGAGGCTTCAATGGAAGCCGAAATAGATGTGAT GCACAAACAGCTTATTGAAGCCAGGAGAATATTCGAGCTTGAGAGGAGAGCAAACTACGAAGAGATTCAGAATAGGAAACAAATGGAGAATTACATGGTT TCACTGCATCGTCAACTTCAGGAGCTAAGGGAAGAGCAGCAGGATGAAATTGGAGAGACAAAGGAACCTAGATTAGAAGGTGGAGGCTATCAAAGTATGG ACCTACACCATGGAACGGAAAACGGCGACAGATTTTCTGACGACAATAATAGTGAAAGGTGA
AA sequence Show only first row Show all	>Lus10041450 pacid=23146639 polypeptide=Lus10041450 locus=Lus10041450.g ID=Lus10041450.BGIv1.0 annot-version=v1.0 MSRRRRRSGQSDGFQGYEDGSWHDENRSMPLHNHPAALEEELDFLHQEMRRIMTENEAIVNHNRALQSEVTRKYGEIDKLEQMIPQLQAEKETDIRELIQ TGLKLEAELRSREPLKVEVRLLRAEVEHLNTSVGDLTSFASSLRQEVEQVDAEKRQEASMEAEIDVMHKQLIEARRIFELERRANYEEIQNRKQMENYMV SLHRQLQELREEQQDEIGETKEPRLEGGGYQSMDLHHGTENGDRFSDDNNSER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55170			unknown protein		Lus10041450 [exp]	0	1
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10041908 [exp]	1.4	0.7983
AT1G14990			unknown protein		Lus10035021 [exp]	1.7	0.7821
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10032908 [exp]	10.9	0.6953
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	13.3	0.7944
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10027231 [exp]	15.5	0.7487
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	15.7	0.7641
					Lus10043038 [exp]	17.6	0.7750
AT2G21195			unknown protein		Lus10041068 [exp]	17.9	0.7352
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	20.5	0.7170
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	21.1	0.7698

Compare expression of checked genes

Lus10041450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.