Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25900 523 / 0 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3) AT3G63250 384 / 2e-133 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 376 / 3e-130 HMT3 homocysteine S-methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034320 [exp] 652 / 0 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10039356 [exp] 371 / 3e-128 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10014686 [exp] 369 / 2e-127 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006602 [exp] 330 / 1e-112 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10006901 [exp] 306 / 2e-103 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125200 [exp] 551 / 0 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Potri.005G213100 [exp] 382 / 2e-132 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.002G049800 [exp] 372 / 1e-128 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 372 / 1e-128 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 347 / 7e-119 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041451 pacid=23147010 polypeptide=Lus10041451 locus=Lus10041451.g ID=Lus10041451.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAGAAGGTGTCGCCATCGCCGTCGCCGGCTACATTGTTGGATGACCTACTGGAGAAAGCAGGCGGCTGCGCGGTGATCGACGGCGGATTCG CCACCCAACTTGAGAAACACGGCGCTTCCATTAACGACCCGCTCTGGAGCGCTCTCTGCTTGATCAAAGACCCTGACCTCATTCAAAAGGTTCATTTGGA ATACTTGGAAGCCGGCGCTGACATTTTAGTGACATCGTCCTATCAGGCTACCATTCCCGGGTTTCTGTCAAGGGGACTTTCCACTGAGGAAGCAGAGTCG TTACTGCAAAACAGTGTAACTTTAGCTGTAGAAGCTCGCAATAAGTTTTGGGACAGTGTGAAAAGCTATCCTGGAAATGAATACAATAAGGCTTTAGTTG CAGCTTCAATTGGGAGCTATGGTGCTTATCTTGCTGATGGCTCCGAATACAGTGGGTGGTACGGAGAAGATGTTACGTTGGAAAAGCTGAAAGATTTCCA TAGACGTAGATTGCAAGTTCTTGTCGAGGCAGGTCCCGATTTGCTGGCATTCGAGACCATCCCCAATAAGCTTGAAGCCCAGGCTTGTGTGGAGTTGCTT GAAGAGGAAAATGTGAGGATTCCGTCATGGATTTGCTTCAGCTCGGTGGACGGCCAGAATGCTCCGTCAGGAGAGAGTTTCAAAGATTGCCTTGACGTCA TAAATAAGAGCAGTAGAGTGATTGCAGTTGGCATCAATTGTGCACCTCCCCAGTTTGTTGAATCCCTCATCTCTAAGTTTCATGAGTGGAGCCATAAGTT TATAGTGGTTTATCCCAATAGTGGTGAAGTATGGGACGGCAGAGCCAAAAAATGGGTGCCATCTGCATGTTTCGGAGATGACGAATTCCAACTGTGGGCT AAAAGATGGCACAAGTTAGGAGCTAGCCTAATCGGTGGTTGTTGCAGAACAACTCCTGCTACTGTTACTGCAATTTCAAAGGCCCTCAAACAAAAATCCC GACTTAGCCAGACAACACAGTTTCAGTCAGGATTTAAGCTTATATACAACAATACAAAAGCAAATTCTTCTTAG
AA sequence Show only first row Show all	>Lus10041451 pacid=23147010 polypeptide=Lus10041451 locus=Lus10041451.g ID=Lus10041451.BGIv1.0 annot-version=v1.0 MGFEKVSPSPSPATLLDDLLEKAGGCAVIDGGFATQLEKHGASINDPLWSALCLIKDPDLIQKVHLEYLEAGADILVTSSYQATIPGFLSRGLSTEEAES LLQNSVTLAVEARNKFWDSVKSYPGNEYNKALVAASIGSYGAYLADGSEYSGWYGEDVTLEKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELL EEENVRIPSWICFSSVDGQNAPSGESFKDCLDVINKSSRVIAVGINCAPPQFVESLISKFHEWSHKFIVVYPNSGEVWDGRAKKWVPSACFGDDEFQLWA KRWHKLGASLIGGCCRTTPATVTAISKALKQKSRLSQTTQFQSGFKLIYNNTKANSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	0	1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	1.0	0.9598
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	1.7	0.9230
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	4.9	0.8752
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	4.9	0.8950
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	8.9	0.8828
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	8.9	0.9282
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	11.4	0.8745
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	13.1	0.8534
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	15.8	0.9014
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	16.1	0.8550

Compare expression of checked genes

Lus10041451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.