Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 1285 / 0 ARM repeat superfamily protein (.1) AT3G08947 999 / 0 ARM repeat superfamily protein (.1) AT3G08943 982 / 0 ARM repeat superfamily protein (.1) AT2G16950 102 / 4e-22 ATTRN1 transportin 1 (.1.2) AT2G16960 67 / 3e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034318 [exp] 1705 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 1327 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 1326 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 1323 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 444 / 8e-147 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 139 / 2e-38 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 134 / 7e-36 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1) Lus10023999 [exp] 82 / 1e-15 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025083 [exp] 79 / 1e-14 AT2G16950 1392 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 1375 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1370 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 987 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 969 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 81 / 3e-15 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 71 / 3e-12 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.016G119900 [exp] 49 / 2e-05 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10041453 pacid=23146894 polypeptide=Lus10041453 locus=Lus10041453.g ID=Lus10041453.BGIv1.0 annot-version=v1.0 ATGGCAATGGAAGTCACCCAAGTGCTTTTGGCGGCACAATCGATAGACGGAAATGTACGGAAACAAGCAGAAGAAAGTTTGAGACAGTTTGAAGAGCAGA ACCTTCCTTCTTGCTTGTTGTCACTCTCTGGGGAGCTTGCTAATGATGAGAAACCCGCTGAAAGCCGTAAGTTAGCAGGGTTGATTTTGAAGAATGCGTT GGATGCTAAGGAACAGCATAGGAAAGCCGAACTCGTCCAAAGATGGCTATTGTTGGATGCTGCGGTGAAGAGTCAGGTCAAGTCTTGCCTAATGAAGACA CTTTCTTCACTGGAGTTTGATGCTCGATCCACTGCCTCACAAGTTATTGCAAAGATTGCAGGTATTGAGTATCCCCAGAAACAGTGGCCTGAGTTGATTG GCTCACTTTTATCAAATATTCATCAGCTTCCATCTCATTTTAAGCAAGCCACACTTGAGACTCTTGGTTATTTTGGTGAGGAAGTTTCTGCTGATGTCGT TGACCAGGAGGATGTGAACAAAATTCTTACAGCGGTAGTTCAGGGAATGAGTGGATCTGAAGTAAGCAGTGAAGTTAGGCTTGCTGCTGTTCGTGCACTC CATAATGCACTTGCCTTTGCTCAAGCCAATTTTAGCAATGACATGGAGCGTGATTATATAATGAAAGTTGTATGTGAAGCGACCCAATCCCAGGACATGA AGATTAGGCAGGCTTCTTTTGAGTGCTTAGTCTCCATTTCATCAATGTATTACGAGAAGTTGGTCCCTTACATCCAGGATTTATTTAACATCACAGCAAA AGCAGTTAAAGAAGACGACGAGTCAGTGGCTCTTCAGGCAATTGAGTTTTGGAGTGCAATCTGTGAGGAGGAAATAGATATCCTAGAAGAATATGGTGAT ATCTTTACTGATGAAACCAATATACCATGTTTTTATTTTGTCAAGCAGGCTCTTCCTGCACTTGTACCAATCTTATTGGAGACAATCCTGAAACAAGAGG AGGATCAAGATCAAGATGAAGAGGCATGGAACATTGCAATGGCTGGAGGGACTTGCCTTTATCTGGTTGCACGTACTGTTGGGGATGACGTTGTTCCACT TGTAATGCCATTCATTGAACAAAACATTACAAAGCCAGATTGGAGACAAAGGGAGGCAGCAACTTATGCTTTTGGCTCAATCTTGGAGGGACCCTCCATT GGGCAATTAACTCCTCTTGTGAATGTTGCTTTGGGTTTCATGCTAACTGCTCTAATGCAGGATCCAAATAACCATGTGAAAGATACCACTGGTTGGACTC TTGGTCGCATCTTTGAGTTTCTCCATGGGCCCACTACAGATTCTAGCATAATATCTGAAGAAAACTGCAAACAGATCATCTCGGTTCTGCTCCATAGTAT GAAGGATGCACCAAATGTAGCAGAAAAGGCTTGTGGTGCTCTTTACTTCCTTGCACAAGGCTATGAAGATTCAGCTTCTTGTCCTCTAACTCCCTGTTTT CAGGAAATTGTTCAGTCCTTGCTTACTGCTTCTCACAGGGAAGATGCTGGGGAGTCGAGGTTAAGGAGTGCTGCTTATGAAACTCTGAATGAGGTTGTAA GGTGCTCAACTGACGAAAATGCATCTTTGGTTTTGCAACTAGTTCAGGTCATTAAGGATGAGCTCTTGAAGAGTCTTGAAGGGCAACCACTGCCAGATAG ACAGAAACAGGGTGAATTGCAGGGTTCTCTATGTGGATGCTTACAAGTTATCATTCAAAAGCTAGGAGCTTCAGAACAGACAAAGATTGCCTTGATGCAC CATGCTGATGACATAATGATACTCTTTCTCAGGGTTTTGGGCTATAGAAGTGCAACTGTTAGTGAAGAGGCCATGCTAGCTATTGGAGCCCTAGCCTATG CGGCTGGTCCTAGTTTTGAAAAATACATGGCAGAGCTTTTTAAGTATTTGGAGATGGGCCTTCAGAATTTTGAGGAGTACCAGGTATGTGCCGTGACAGT AGGTGTTGTGGGTGACATCTGCAGGGCCTTGGAAGACAAGGTCTTACCTTATTGTGATGGGATAATGACAGAACTCCTCAAAGATCTATCAAGCAATCAG CTACACCGATCCGTGAAGCCTCCAATTTTCTCGTGTCTTGGTGATATTGCGTTGGCTATTGGTCCAGAATTTGAGAAGTATCTGATGCATTCTACACCGA TGCTTCAAAGTGCTGCACAGTTGTCTGCCCAGACAGAAGGTGCTGATGATGAAATGATCGAGTACGCAAATTCACTGAGAAGTGGAATTATGGAGGCATA TTCTGGGATCCTTCAGGGTTTCAAGAACACATCCAAGGCCCAGCTCTTAATTCCTTATGGACCACACGTGCTCGGGTATTTGGACAGCATTTACAAGGGA AAGGACATGGATGACTTTGTGATGAAAGCAGCCATTGGTGTACTTGGAGATTTGGCGGATACGCTTGGAAATAGTGCTGGTTCTTTGATACAGCAGTCTC ATTTCTGCAGAGACTTCTTGAATGAATGTCTGTCATCCACAGATGAGAGTATCAAGGAATCTGCTGAGTGGGCTAAGTTGGCCATCACGAAGGCCATCTC TGTTTGA
AA sequence Show only first row Show all	>Lus10041453 pacid=23146894 polypeptide=Lus10041453 locus=Lus10041453.g ID=Lus10041453.BGIv1.0 annot-version=v1.0 MAMEVTQVLLAAQSIDGNVRKQAEESLRQFEEQNLPSCLLSLSGELANDEKPAESRKLAGLILKNALDAKEQHRKAELVQRWLLLDAAVKSQVKSCLMKT LSSLEFDARSTASQVIAKIAGIEYPQKQWPELIGSLLSNIHQLPSHFKQATLETLGYFGEEVSADVVDQEDVNKILTAVVQGMSGSEVSSEVRLAAVRAL HNALAFAQANFSNDMERDYIMKVVCEATQSQDMKIRQASFECLVSISSMYYEKLVPYIQDLFNITAKAVKEDDESVALQAIEFWSAICEEEIDILEEYGD IFTDETNIPCFYFVKQALPALVPILLETILKQEEDQDQDEEAWNIAMAGGTCLYLVARTVGDDVVPLVMPFIEQNITKPDWRQREAATYAFGSILEGPSI GQLTPLVNVALGFMLTALMQDPNNHVKDTTGWTLGRIFEFLHGPTTDSSIISEENCKQIISVLLHSMKDAPNVAEKACGALYFLAQGYEDSASCPLTPCF QEIVQSLLTASHREDAGESRLRSAAYETLNEVVRCSTDENASLVLQLVQVIKDELLKSLEGQPLPDRQKQGELQGSLCGCLQVIIQKLGASEQTKIALMH HADDIMILFLRVLGYRSATVSEEAMLAIGALAYAAGPSFEKYMAELFKYLEMGLQNFEEYQVCAVTVGVVGDICRALEDKVLPYCDGIMTELLKDLSSNQ LHRSVKPPIFSCLGDIALAIGPEFEKYLMHSTPMLQSAAQLSAQTEGADDEMIEYANSLRSGIMEAYSGILQGFKNTSKAQLLIPYGPHVLGYLDSIYKG KDMDDFVMKAAIGVLGDLADTLGNSAGSLIQQSHFCRDFLNECLSSTDESIKESAEWAKLAITKAISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	0	1
AT1G69070			unknown protein		Lus10019174 [exp]	1.0	0.9709
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	2.4	0.9573
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	3.0	0.9567
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	3.5	0.9561
AT1G07970			unknown protein		Lus10038462 [exp]	5.1	0.9476
AT3G18020			Pentatricopeptide repeat (PPR)...		Lus10024513 [exp]	6.3	0.9290
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	6.5	0.9516
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	7.1	0.9556
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	7.3	0.9507
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10023381 [exp]	7.5	0.9195

Compare expression of checked genes

Lus10041453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.