Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24314 152 / 6e-48 PDE225, PTAC7 PIGMENT DEFECTIVE 225, plastid transcriptionally active7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010700 [exp] 150 / 4e-47 AT5G24314 168 / 5e-54 PIGMENT DEFECTIVE 225, plastid transcriptionally active7 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041454 pacid=23146982 polypeptide=Lus10041454 locus=Lus10041454.g ID=Lus10041454.BGIv1.0 annot-version=v1.0 ATGTCTCTTTCTTCCATGCACTTCGCCTTCTCATCTCTTTCTCCGGTCACCTACCGCAACTCCACCTCCAGGAAACCTCACCCGGTCTTGGCGCAGTCCG GAAGTGACCGGCGAGTCTGGCGCCGTCGAAAACTGACGAAGGAGGATGACATGAGGAAATACAGAATGGAGAGAGTTCCATTCCTGGAGGAGCAAGTTAG GACCATGAGAGAAAGTGGGAAGCTGCTCCAGTTCGACATAGAGTGGCTCCAGCGATCTGAAGACAACAAGTATCATTTTGTTAATAAGGTTGCAGCGGAG GCTACGGAGATGCTAGAGCGCAACCCCGACGAGTACGGTGGGAGCAAGAAACCGATTCTTCATGTCCTTAGCAACATGATGAACGATGCTGGATTTTACA GGCCTGAGGCTTACGAAGAGACTGACCTCGTAACTTAG
AA sequence Show only first row Show all	>Lus10041454 pacid=23146982 polypeptide=Lus10041454 locus=Lus10041454.g ID=Lus10041454.BGIv1.0 annot-version=v1.0 MSLSSMHFAFSSLSPVTYRNSTSRKPHPVLAQSGSDRRVWRRRKLTKEDDMRKYRMERVPFLEEQVRTMRESGKLLQFDIEWLQRSEDNKYHFVNKVAAE ATEMLERNPDEYGGSKKPILHVLSNMMNDAGFYRPEAYEETDLVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	0	1
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10018875 [exp]	1.7	0.9048
AT2G41950			unknown protein		Lus10029301 [exp]	2.4	0.9021
AT2G17695			unknown protein		Lus10028386 [exp]	3.0	0.9005
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	5.5	0.8930
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	6.8	0.8581
AT3G09860			unknown protein		Lus10023014 [exp]	7.3	0.8921
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	7.4	0.8763
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10009792 [exp]	10.1	0.8085
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	12.4	0.8688
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	14.2	0.8494

Compare expression of checked genes

Lus10041454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.