Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71350 810 / 0 eukaryotic translation initiation factor SUI1 family protein (.1) AT1G09150 59 / 4e-10 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034314 [exp] 1177 / 0 AT1G71350 809 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Lus10031485 [exp] 62 / 5e-10 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10015197 [exp] 61 / 7e-10 AT1G09150 314 / 5e-110 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G096600 [exp] 869 / 0 AT1G71350 818 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Potri.013G013700 [exp] 62 / 4e-11 AT1G09150 307 / 2e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Potri.005G023600 [exp] 62 / 8e-11 AT1G09150 305 / 1e-107 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain CL0178 [flax] [poplar] PF01253 [flax] [poplar] SUI1 Translation initiation factor SUI1
Representative CDS sequence Show only first row Show all	>Lus10041458 pacid=23147014 polypeptide=Lus10041458 locus=Lus10041458.g ID=Lus10041458.BGIv1.0 annot-version=v1.0 ATGTTTAAGAAAGCCGTGGATGCCAAATCTCATCAGAGGCTATCGGGAGCTGACCGTAAGAAGCTCAAACGAACCCTCAAAGAAAAGTTCCCCCGTGCTT CTGATGCCGACATGGACGTCTTACTCCCTCCCAAGGCTAGTTCTCAGATATCGGTTGCTAAGCTTCAAACTCGTGTTTTGATATACAGCGTTGAAGGTGA CCTCCCTATGTTTTTCGACATTGATGGCCGAGGCACTGAGATTTACCCTACAGTTTTTGCACTCTGGAGAGTACCTGAACTCTTGCCTTCTTTTCTCTTG AAGGGAGGTGAGGTTTCTCGATTTCTTCTCGGAGGGGCTGATTTGATGTTCCCAGGCATTAGTGTTCTTGCTGAAGGCCTACCTTCCTTCCGAGCTGGTG AAGCATGGGCTGTGAAAGTTCCAGGGAACCCAGCTCCTATTGCTGTTGGGTCAACTACTATGAATAGTGCTGAAGCAATGAAGGCTGGTCTGCGTGGGAA AGCTTTAAGAATAACACACTACTACAGGGATTCACTTTGGGAGTCAGTTGAGGGCCATTTTGTGCCCAATGAAGGTTTTATGGAGGATATTGTCATTCAT GATCCAGCTTTTGCTCTCCCGGCTCAAGATTCTGATTCAGTTGAAGCTCTTGATGACTCGCCATTTGATGAACAGAATGGGGAGTTGGCTGGAGCTAGGA ACACACTGGATTCTCATCCTTCATCGTCAAAACAAGCGTCCGATTCCCATGTTGAAGAAATAAATGCAAATGTCAGTAACTTGAAGGTTTCAGATACTAT TGACAATGAATCAACCTCGGATGAACAGCATACCTTATCTGCTGACGAAGTGGATTGTTTGTTAGACAAATGTCTTTTGCAAGCCCTCCATACGACTGTT AAAGACAAGGATCTTCCAATGCCTGGAAGTACTTTATGGTCAAATCATGTTTTACCATGCAGACCTTCTGCAATCACATTGGATATCAAGAAGTCAACCC ACAAGAAACTTTCAAAGTGGTTACAAACCAAGTGTTCCTCTGGATTGATATCAGGGAAAGAAGATAAACACAAGAAGGAAACTGTTTTAATCGCAGTTAA CCGAAATCACCCAGACTATACTTCCTTCAGGCCCGAGAAAAGGCAGGAGCAACAGATTCAACACCGCGAGGATCAACCAACCAGTGGGAGCAATTCACAG AAGACACTTGAAGTGGTGCAGATATACAAATCTAGTTCGCACGTGAACCCGATTTTCACCTCAGTTGGAGCCGATACAGAGAAGCTGTACAGTGGTTCTG AAGCGTCTGATGTTGTGTTTAAGTACGTAGAAAAAGAAAACCTGGTGAAGCCAACAGAAAAGTCAACCATTGTTTTGGACGCAACGCTGTGTGATGCGCT GTTCAAAGGTGCTATCAAGAAAGGATCGACTTATCCGACGGTGATTCATAAGAAAGATTTAGGATCGACATTTGTTGGTCGGATGCAGCCGCACCATATG GTGATCAGAGGTGGCGAATCAGTTGTTCGTAAAGGCGCTTTGAAAACGGTACAGATACTGACAGAAAGGCGCCAAGGAAACAAAAAGGTGACTAAATTGT CGGGCGTGGAAAGTTTCTTGATCGATCCGGAATCACTGGCGTCTGAATTGCAGAAGAAATTTGCTTGCAGTACATCAGTTGGAGAGCTTCCAGGGAAGAA AGGAATGGAAGTTATGATCCAAGGTGGTAAAATTGAAGATGTGGCACGTCTTCTGGTTGAGCAATATGGGATTCCAAAGAGGTACATTGAGGTTCTGGAT AAAACCAGGAAATGA
AA sequence Show only first row Show all	>Lus10041458 pacid=23147014 polypeptide=Lus10041458 locus=Lus10041458.g ID=Lus10041458.BGIv1.0 annot-version=v1.0 MFKKAVDAKSHQRLSGADRKKLKRTLKEKFPRASDADMDVLLPPKASSQISVAKLQTRVLIYSVEGDLPMFFDIDGRGTEIYPTVFALWRVPELLPSFLL KGGEVSRFLLGGADLMFPGISVLAEGLPSFRAGEAWAVKVPGNPAPIAVGSTTMNSAEAMKAGLRGKALRITHYYRDSLWESVEGHFVPNEGFMEDIVIH DPAFALPAQDSDSVEALDDSPFDEQNGELAGARNTLDSHPSSSKQASDSHVEEINANVSNLKVSDTIDNESTSDEQHTLSADEVDCLLDKCLLQALHTTV KDKDLPMPGSTLWSNHVLPCRPSAITLDIKKSTHKKLSKWLQTKCSSGLISGKEDKHKKETVLIAVNRNHPDYTSFRPEKRQEQQIQHREDQPTSGSNSQ KTLEVVQIYKSSSHVNPIFTSVGADTEKLYSGSEASDVVFKYVEKENLVKPTEKSTIVLDATLCDALFKGAIKKGSTYPTVIHKKDLGSTFVGRMQPHHM VIRGGESVVRKGALKTVQILTERRQGNKKVTKLSGVESFLIDPESLASELQKKFACSTSVGELPGKKGMEVMIQGGKIEDVARLLVEQYGIPKRYIEVLD KTRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71350			eukaryotic translation initiat...		Lus10041458 [exp]	0	1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10039888 [exp]	11.0	0.8677
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	11.9	0.8686
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	17.6	0.8361
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	27.5	0.8321
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	32.6	0.8267
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	36.9	0.8113
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	37.0	0.8159
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	43.5	0.8237
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	48.6	0.8096
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	52.6	0.8214

Compare expression of checked genes

Lus10041458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.