Plant FIBer expression Database

Lus10041461 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13360 111 / 4e-31 unknown protein
AT3G25870 91 / 5e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034310
[exp]
334 / 7e-119 AT1G13360 109 / 2e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G126000
[exp]
187 / 6e-61 AT1G13360 151 / 1e-46 unknown protein
Potri.008G119800
[exp]
170 / 3e-54 AT1G13360 108 / 1e-29 unknown protein
Potri.015G054300
[exp]
86 / 7e-21 AT1G13360 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10041461 pacid=23146957 polypeptide=Lus10041461 locus=Lus10041461.g ID=Lus10041461.BGIv1.0 annot-version=v1.0
ATGGAAGAAGAGCTGGGTAACAAGAAGCGTGCAAGAGACGACACCACCGTAGATCTGTCCTTCGACTTCCCGGAGGTGAAGAAAATACGGGAGGATTTGT
TCGACGAGTCGGATCCTGACCCGACAGTTCAGGATCTGGATTCCGTCATGAAGAGCTTTCAAGAAGAGATCTCGCCGGCGTCATCGTCGCTGACGGCCCC
GGTAGTCGTGGATCTGACGTCGGAATCTGGAGATTCGCAGGCCGAGCTTGGATTTCTGCTGGAAGCCTCTGATTATGAGCTCGGTTTGCCTCCTTCCTCG
TCTGGACAGGAGGATAAACCAACCGTGGAGGCCGAAGCAGAGTTGGTGCGCATCGAGTCGGAGGAATCCGCCGGGTTTGGAGGCGATCTGTGGGGGCTTC
AGGACGGGTTTCCGAGTTATGATTCGTTTGACTTGGGTGAGGTGGTGTATGACGAAGGGCTGCTTGATTATTCAAACGTTTGTTTCGATTCGGCGGAGTA
TTCGGACTACTCGTGGCGGTTGGAAACGGCTGCGCCGGCTGAGTGA
AA sequence
>Lus10041461 pacid=23146957 polypeptide=Lus10041461 locus=Lus10041461.g ID=Lus10041461.BGIv1.0 annot-version=v1.0
MEEELGNKKRARDDTTVDLSFDFPEVKKIREDLFDESDPDPTVQDLDSVMKSFQEEISPASSSLTAPVVVDLTSESGDSQAELGFLLEASDYELGLPPSS
SGQEDKPTVEAEAELVRIESEESAGFGGDLWGLQDGFPSYDSFDLGEVVYDEGLLDYSNVCFDSAEYSDYSWRLETAAPAE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13360 unknown protein Lus10041461
[exp]
0 1
AT4G17500 AP2_ERF ATERF-1, AtERF1 ethylene responsive element bi... Lus10015296
[exp]
11.5 0.9589
AT1G47480 alpha/beta-Hydrolases superfam... Lus10042662
[exp]
12.7 0.9428
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Lus10031500
[exp]
12.7 0.9325
AT3G28210 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, ... Lus10039448
[exp]
13.6 0.9183
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Lus10042593
[exp]
14.1 0.9575
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Lus10022047
[exp]
21.9 0.9574
AT1G49310 unknown protein Lus10040476
[exp]
25.7 0.9252
AT4G19880 Glutathione S-transferase fami... Lus10014304
[exp]
27.1 0.9564
AT1G79460 ATKS1, ATKS, GA... GA REQUIRING 2, ARABIDOPSIS TH... Lus10005399
[exp]
28.1 0.9483
AT3G17800 Protein of unknown function (D... Lus10041984
[exp]
28.6 0.9489

Lus10041461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.