Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30790 50 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT2G41473 45 / 1e-06 F-box family protein (.1) AT5G44220 45 / 7e-06 F-box family protein (.1) AT1G31080 45 / 8e-06 F-box family protein (.1) AT1G50870 45 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT1G53790 45 / 2e-05 F-box and associated interaction domains-containing protein (.1.2) AT1G47790 44 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT4G38870 44 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G31090 44 / 3e-05 F-box family protein (.1) AT1G30920 43 / 5e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034309 [exp] 144 / 2e-41 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 86 / 1e-19 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10014979 [exp] 85 / 1e-19 AT1G33530 57 / 6e-09 F-box family protein (.1) Lus10003705 [exp] 85 / 2e-19 AT4G38870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 81 / 9e-18 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 80 / 1e-17 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 78 / 2e-17 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 78 / 8e-17 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 69 / 5e-14 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 53 / 2e-08 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.010G154500 [exp] 51 / 1e-07 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 50 / 2e-07 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199601 [exp] 45 / 1e-06 AT3G06240 61 / 2e-12 F-box family protein (.1) Potri.019G062900 [exp] 47 / 2e-06 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 46 / 6e-06 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.013G093100 [exp] 45 / 8e-06 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 44 / 3e-05 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G012900 [exp] 43 / 5e-05 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 43 / 6e-05 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041462 pacid=23146806 polypeptide=Lus10041462 locus=Lus10041462.g ID=Lus10041462.BGIv1.0 annot-version=v1.0 ATGCCGGTTCTTCGCCTGAAACCTAGGAAACTTGCATCTAAAGTAACCAAAGGGTGCAATGAACACAACAAGAACAAGAAGACGAAGCAGAAGAAGAGAT TTACATGTGGTGATTATGACAAGGCTACTCAAGCTGCCAGTTGTTTAATTGCCAATGATAATCAGGTGGTTTCTCAGATATTCAGCAGGCTACCAGTGAA GTCCTTTATGCTGTTCAAGTGCGTTTCTAAAGCTTGGAAGTCGATTATCGAACAAGATTCGCACTTTATCAATTTACACTACAACCATTCAGTAGGACGC CCAGGGTTGTTAATTTTCACCACCGGTAGTAGTACAAAGTATCCCAAAAGTTGTTGTCATCAGTTGTCTTTGCTGTCAGTTGATTTGCACTCTGATGATG ACATTATCCGCGGAGCCAACGTTCGCAGCGTAAAGACGATACAGTCGTCAATCCCTAAAGATGTCAAGTTTCTAGACCCCGTTGCAGGATTGCTCTGTTT GGTTGTCCACTTTGCTTTACAGTACAGATATGCAATGTCATCACTGGAGTAA
AA sequence Show only first row Show all	>Lus10041462 pacid=23146806 polypeptide=Lus10041462 locus=Lus10041462.g ID=Lus10041462.BGIv1.0 annot-version=v1.0 MPVLRLKPRKLASKVTKGCNEHNKNKKTKQKKRFTCGDYDKATQAASCLIANDNQVVSQIFSRLPVKSFMLFKCVSKAWKSIIEQDSHFINLHYNHSVGR PGLLIFTTGSSTKYPKSCCHQLSLLSVDLHSDDDIIRGANVRSVKTIQSSIPKDVKFLDPVAGLLCLVVHFALQYRYAMSSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30790			F-box and associated interacti...		Lus10041462 [exp]	0	1
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	23.5	0.6403
AT3G15630			unknown protein		Lus10017768 [exp]	31.1	0.6259

Compare expression of checked genes

Lus10041462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.