Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34890 122 / 5e-33 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 121 / 7e-33 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034306 [exp] 164 / 1e-47 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054600 [exp] 138 / 9e-39 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041463 pacid=23146880 polypeptide=Lus10041463 locus=Lus10041463.g ID=Lus10041463.BGIv1.0 annot-version=v1.0 ATGGGCGACATTCAACACAATGAGCACAATAACCAGGAAGTCGTCCACGTGCATTCAGCTATACTACGACAAAAGAGACTCCAGTATCAGACTTTGATCC ATGTGGCTCATGTACCTGACTTGAACGTTAAGGACATGCAACTTCTTAGAAAGGTAGCAAGTGAGCATGCTGGTCTCACGAAACATCATCTTTTGAAGTG GTTTGCAGGAACTCGAATAAAGAATGTTGCATCTGGTGGAGGCAATATTTGCACAGCCAGTCCGATATCTGATTTAAACCCACTCTGGATGGCTGCAAGA ACAAAGTTTCGAATTATTGACTCAAAGGGAAACATTAGAACTACACAGGCAGATAAGTTCTTCCTGGGTTACAAGAAAGGTGGATCGTCAGAGTGGTGA
AA sequence Show only first row Show all	>Lus10041463 pacid=23146880 polypeptide=Lus10041463 locus=Lus10041463.g ID=Lus10041463.BGIv1.0 annot-version=v1.0 MGDIQHNEHNNQEVVHVHSAILRQKRLQYQTLIHVAHVPDLNVKDMQLLRKVASEHAGLTKHHLLKWFAGTRIKNVASGGGNICTASPISDLNPLWMAAR TKFRIIDSKGNIRTTQADKFFLGYKKGGSSEW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10041463 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	26.4	0.6046
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017636 [exp]	42.4	0.5832
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	68.8	0.5683
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	88.7	0.5387
AT1G69630			F-box/RNI-like superfamily pro...		Lus10031499 [exp]	89.7	0.5339
					Lus10039973 [exp]	92.5	0.5294
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	99.7	0.5486
					Lus10039431 [exp]	102.3	0.5278
					Lus10024734 [exp]	130.5	0.5119
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	145.4	0.5288

Compare expression of checked genes

Lus10041463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.