Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38470 235 / 1e-73 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT3G02540 228 / 1e-70 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT1G79650 180 / 1e-52 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT1G16190 178 / 7e-52 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G16090 91 / 3e-21 unknown protein AT2G35635 50 / 2e-07 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 50 / 2e-07 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT4G05230 49 / 1e-06 Ubiquitin-like superfamily protein (.1) AT2G36170 48 / 1e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 48 / 1e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034308 [exp] 280 / 8e-91 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 271 / 1e-87 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034307 [exp] 272 / 4e-87 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10026110 [exp] 182 / 1e-53 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10008710 [exp] 119 / 1e-31 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10020933 [exp] 57 / 7e-10 ND 64 / 6e-13 Lus10008873 [exp] 48 / 1e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 47 / 5e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 47 / 5e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126200 [exp] 237 / 4e-74 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.017G114000 [exp] 236 / 5e-74 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.004G100700 [exp] 236 / 6e-74 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.003G186600 [exp] 191 / 5e-57 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.001G038000 [exp] 187 / 2e-55 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.008G119700 [exp] 175 / 1e-35 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.007G067500 [exp] 50 / 2e-07 AT1G31340 224 / 1e-76 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G198700 [exp] 50 / 3e-07 AT1G31340 293 / 1e-103 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G096700 [exp] 50 / 3e-07 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.002G062500 [exp] 50 / 4e-07 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09280 [flax] [poplar] XPC-binding XPC-binding domain CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10041464 pacid=23147026 polypeptide=Lus10041464 locus=Lus10041464.g ID=Lus10041464.BGIv1.0 annot-version=v1.0 ATGAAGATTTCCGTGAAGACATTGAAGGGCAGTAAGTTCGAAATCGAAGTCAAACCCCAAGACACGGTTGCTGATGTAAAAAATCATATAGAAACTGCAC AGGGTGCAGATGTTTACCCAGCTGGACAGCAGATGCTCATCTATCAGGGGAAGGTTCTTAAAGATAACACAACTCTCGAGGAGAATAAAGTCGAGGAAAA TGGCTTTATTGTTGTGATGCTATCAAAGAGCAAAAACTCATCTGGAGAAGGTTCGACTGCTTCAACAGGAAAGGCACCTCAGACTAGTGATCCATTAGCA ACGGCACCTCAGACTGGTGCCCCATTGTCAACAGCACCTCAAGCTCCTGCAGCAACACCATTGGCTGCTCCTGCTCCTGTCCCAGTACCCGCATCACTTG CTGCTCCGGTCGCTTCAGTAGCTACTGCGTCGGATGTTGATCCTTATGGTCAAGCAGCATCTAATTTGGTAGCTGGAAATAACTTGGAGGGAGGCGTCCA GTCCAGCAAATCATTGATATGGGTGGAGGTGCCTGGGATAAAGAAACTGTTATTCGTGCTCTTCGTGCTGCTTATAACAATCCAGAAAGAGCTGTTGAAT ATCTGTATTCTGAAGTTAAATCGTCTTCTGAACCCATACCCTCGAGGAGGACTACTAATTGGGATCCCTGAGCAAGCAGAGGCTGCACCTGTACAAGCAC CTGTGACTGGTCAACCGGCAAACCCTGCAGTGCCTCAAGCCACACAGGCAGCAGCGCCAACTGCCAGTCCTCCTGCAGGACCCAATGCGAATCCTCTGGA TCTTTTCCCTCAGGGTCTTCCTACTGCTGGAGCAGCAGGTGGTGCCGTTGCAGGAAACCTAGACTTCTTGAGAAACAGTCAACAGTTCCAAGCCTTGCGA GCTATGGTGCAGGCTAACCCCCAGATATTGCAGCCCATGCTTCAAGAATTGGGAAAGCAGAATCCCCAACTGATGAGACTAATTCAGGAGCATCAGGCTG ACTTCCTTCGCCTGATCAATGAACCTGTCGAGGGCGGCGAGGAGGGCATATTGGGGCAGCTTGCTGCTGCAATGCCGCAGGCGGTGCAAGTGACTCCCGA AGAGCGCGAAGCACTGGGCCGACTTGAAGCAATGGGGTTTGATCCGCAAATAGTGTTGGAAGTGTTCTTTGCATGCAACAAGAACGAAGAACTGGCTGCC AACTATCTCTTAGATCACATGAATGATTTTGAGGAATGA
AA sequence Show only first row Show all	>Lus10041464 pacid=23147026 polypeptide=Lus10041464 locus=Lus10041464.g ID=Lus10041464.BGIv1.0 annot-version=v1.0 MKISVKTLKGSKFEIEVKPQDTVADVKNHIETAQGADVYPAGQQMLIYQGKVLKDNTTLEENKVEENGFIVVMLSKSKNSSGEGSTASTGKAPQTSDPLA TAPQTGAPLSTAPQAPAATPLAAPAPVPVPASLAAPVASVATASDVDPYGQAASNLVAGNNLEGGVQSSKSLIWVEVPGIKKLLFVLFVLLITIQKELLN ICILKLNRLLNPYPRGGLLIGIPEQAEAAPVQAPVTGQPANPAVPQATQAAAPTASPPAGPNANPLDLFPQGLPTAGAAGGAVAGNLDFLRNSQQFQALR AMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEEGILGQLAAAMPQAVQVTPEEREALGRLEAMGFDPQIVLEVFFACNKNEELAA NYLLDHMNDFEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041464 [exp]	0	1
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10034469 [exp]	2.0	0.9360
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	5.0	0.9254
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	5.5	0.9259
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	6.5	0.9271
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	11.6	0.9186
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	14.0	0.9256
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	14.7	0.8935
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	15.9	0.9201
AT2G32235			unknown protein		Lus10013126 [exp]	16.5	0.9192
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	20.2	0.9174

Compare expression of checked genes

Lus10041464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.