Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 850 / 0 Major facilitator superfamily protein (.1) AT3G54140 481 / 9e-164 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 478 / 7e-163 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 457 / 3e-154 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 437 / 2e-146 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G69870 417 / 4e-138 NRT1.7 nitrate transporter 1.7 (.1) AT2G02020 391 / 4e-129 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G12110 391 / 2e-128 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT5G46050 390 / 3e-128 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 387 / 5e-127 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034305 [exp] 731 / 0 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 624 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 573 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 479 / 3e-163 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 461 / 9e-156 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10032252 [exp] 457 / 4e-154 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10018207 [exp] 451 / 1e-149 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 442 / 2e-148 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 436 / 5e-146 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126300 [exp] 916 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 664 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 608 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G033900 [exp] 600 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111800 [exp] 481 / 9e-164 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 473 / 1e-160 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 467 / 2e-158 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 456 / 6e-154 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 455 / 8e-154 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 452 / 1e-152 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP) CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10041466 pacid=23146942 polypeptide=Lus10041466 locus=Lus10041466.g ID=Lus10041466.BGIv1.0 annot-version=v1.0 ATGGATCCTGCTGGATCTAACGCAAACGAAGCAACAGAGAAGCTAGCAGTGGTGGGATTCAACACGAACATGATAAGCTACTTGACCACACAGCTCCACA TGCCCCTCACTAAAGCCGCAAACACTCTTACCAATTTCGGCGGCACAGCCAGCCTCACTCCTTTACTCGGCGCCTTCCTCGCCGACTCTTACGCCGGCCG CTTCTGGACCATAGTCCTCGCCTCCATCATCTATCAATTCGGAATGACCGGATTGACCCTGTCGGCGGTCCTCCCTCACCTGCGGCCGCCACCGTGCAAA GCGGACGATGTCTGCCAGCAAGCCGACACAGGACAGCTGGCGATCCTCTACGTGTCCTTACTCCTAGGGGCGCTCGGGGCGGGCGGGATCCGACCCCGCG TGGTGGCGTTCGGGGCGGACCAGTTCGACGAGTCCGACCCGAAGCAGGCGACCAAGACGTGGAAGTACTTCAACTGGTACTACTTCGTGATGGGGGTGTC GATTTTGGCGGCGGTGACGGTTGTGGTCTACATCCAGGATAACGTTGGGTGGGGTTGGGGATTGGGGATCCCGACTTTCGCGATGTTTTTGTCGATTGTG GCGTTTATGTTCGGGTACCCGATGTACCGGAGGCTGGAGCCCGTGGGTAGCCCGTTTACCCGGCTGGTGCGGGTGATGGTGGCGGCGTGGCGGAAGAGGA AAGTTGAGATGGTTTCGGATCCGAGAGAGCTGTACCAGAATGAGGAGATGGACGGCCCGATTTCGTTGGGTGGGAAGCTCCTTCACACCAAGCATATGAA GTTCTTAGACAAGGCAGCAATCGTGACAGTCGATGACCAACAAAGTACACCAAATTTATGGAGACTGAACACAGTTCACAGAGTAGAAGAGCTCAAATCC TTAATCCGAATGGGCCCGATATGGGCCGCGGGTATCCTCCTCATCACAGCCTACGCGCAACAAAGCACGTTCTCCCTCCAACAAGCCAAATCAATGGACC GACACCTCACGCCCAAATTCCAAATTCCCGCCGGCTCAATGTCCGTCTTCACCATGACGTCAATGCTCACCACCATCATAATCTACGACCGCATTTTCGT GCCCCTCGTCCGCCGCCTGACGGGCCTGGACCGGGGGATCACATTCCTCCACCGCATGGGGATAGGATTCGTGATATCCATTCTGGCAACGCTGGTGGCA GGGTTCATGGAAGTCAAGCGCAAGGAAGTTGCGCGTGACCACGGCCTGCTCGATTTCGGGCACAAGACGGTGCCCATTTCGGTTTTCTGGTTGGCGCCGC AGTACTGTCTGCATGGGGTGGCGGAGGCGTTCATGTCGATAGGGCATTTGGAGTTTTTCTACGATCAGGCGCCGGAGAGTATGAGGAGTACGGCCATGGC GCTGTTCTGGACGGCGATATCGGTGGGGAATTACATGAGCACCCTTTTGGTTACCTTGGTCCACAAGTTTAGTGCCGGATCGGACGGTTCGAACTGGCTG CCCGATCAGAATTTGAATAAGGGGAGGTTGGAGTATTTTTATTGGCTGATAACGGTGTTGCAGGTGGTGAATTTCGTGTACTACTTGTTTTGTGCTAAGT TGTATACTTATAAGCCGATTCATGTGGACGCGCCGCCGAAGGGAGAGGAGGAGAGTGGTGGAGTTGAGCTTGCTGCTAATAAGGATGCTGCAACCACTGC CTACTCCCAAATCTGCGCTCCTTTCCATACCTGGGCGGTTAGGACCGCTGTTTATGCTGGAATGTACACGCTCCCAACAAGAGACCAGCTTCTGATGAGG CTGCAAGAAACTGATGAATCAGCGGAGAAGAAGATGAGGAGGTACATACAAGCTTCCCTTCCGGTGATCCAGCACATTGACCGGCTTTACACTTCCAGGA ACATCACCTTAGATTGGTAA
AA sequence Show only first row Show all	>Lus10041466 pacid=23146942 polypeptide=Lus10041466 locus=Lus10041466.g ID=Lus10041466.BGIv1.0 annot-version=v1.0 MDPAGSNANEATEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTASLTPLLGAFLADSYAGRFWTIVLASIIYQFGMTGLTLSAVLPHLRPPPCK ADDVCQQADTGQLAILYVSLLLGALGAGGIRPRVVAFGADQFDESDPKQATKTWKYFNWYYFVMGVSILAAVTVVVYIQDNVGWGWGLGIPTFAMFLSIV AFMFGYPMYRRLEPVGSPFTRLVRVMVAAWRKRKVEMVSDPRELYQNEEMDGPISLGGKLLHTKHMKFLDKAAIVTVDDQQSTPNLWRLNTVHRVEELKS LIRMGPIWAAGILLITAYAQQSTFSLQQAKSMDRHLTPKFQIPAGSMSVFTMTSMLTTIIIYDRIFVPLVRRLTGLDRGITFLHRMGIGFVISILATLVA GFMEVKRKEVARDHGLLDFGHKTVPISVFWLAPQYCLHGVAEAFMSIGHLEFFYDQAPESMRSTAMALFWTAISVGNYMSTLLVTLVHKFSAGSDGSNWL PDQNLNKGRLEYFYWLITVLQVVNFVYYLFCAKLYTYKPIHVDAPPKGEEESGGVELAANKDAATTAYSQICAPFHTWAVRTAVYAGMYTLPTRDQLLMR LQETDESAEKKMRRYIQASLPVIQHIDRLYTSRNITLDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	0	1
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	1.0	0.9444
AT4G29110			unknown protein		Lus10014153 [exp]	1.4	0.9331
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	2.8	0.8831
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	5.9	0.8830
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	6.0	0.8779
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	6.2	0.8534
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	6.6	0.8732
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10000692 [exp]	8.0	0.8617
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	9.5	0.8772
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	9.9	0.8938

Compare expression of checked genes

Lus10041466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.