Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25860 448 / 2e-155 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 373 / 4e-126 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G54220 127 / 7e-32 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 125 / 3e-31 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 104 / 6e-24 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G06850 92 / 4e-20 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT4G26910 86 / 2e-18 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 87 / 3e-18 Dihydrolipoamide succinyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034304 [exp] 588 / 0 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006069 [exp] 330 / 4e-113 AT1G34430 377 / 3e-131 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10009432 [exp] 275 / 9e-92 AT1G34430 312 / 2e-106 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006877 [exp] 139 / 2e-36 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 136 / 1e-34 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10009433 [exp] 115 / 1e-29 AT1G34430 251 / 2e-81 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10008412 [exp] 108 / 2e-25 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 108 / 2e-25 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 93 / 4e-20 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126600 [exp] 462 / 5e-161 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 453 / 2e-157 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.013G114300 [exp] 381 / 4e-129 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 375 / 4e-127 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.001G198000 [exp] 131 / 3e-33 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 127 / 1e-31 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 110 / 6e-26 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.008G219700 [exp] 100 / 1e-22 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.010G011300 [exp] 94 / 2e-20 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.014G154700 [exp] 85 / 1e-17 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0149 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10041467 pacid=23147025 polypeptide=Lus10041467 locus=Lus10041467.g ID=Lus10041467.BGIv1.0 annot-version=v1.0 ATGCCGGCGCTCAGCTCCACCATGACGGAAGGCAAGATCGTCTCCTGGATTAAATCCGAGGGCGACGTTCTCTCCAAAGGCGAGAGCGTCGTCGTCGTTG AGTCCGATAAGGCTGATATGGACGTCGAGACGTTTTATGACGGCATCCTTGCCGCAATCGTCGTTCCAGAAGGCGAGTCCGCTCCCGTCGGCGCTCCAAT TGGACTCTTAGCTGAGACCGAAGCTGACATCGCTGAAGCTAAAGCTAAAGCTGCTGCTGCTTCTGGTGGTAGCTCTGCTACTGCTTCCGCCCCTACTCCT GCTGCTTCTCCGGCTGCTTCGCCTATTCCTCCGGTAGCTGCTGCTCCGCCTCCTCCTCCTCCGGCTGCGGATGGGCCGAGGAAGATTGTCCTCACGCCTT ACGCGAAGAAATTGGCGAAGCAAAACAAGGTGGATATCAGTAAGGTGGTTGGGACTGGTCCGTATGGGAGGATTACTCCTGGAGATATTGAAGCTGCTGC AGGAATTGTGCCTAAGCAAAGTGTCGCAGCTCCTGCTGCTGCACAGCCAGCTACGGCTGCTGCGCCTGCCAAAGCTGCACCGGCGGCTCCTTCTACTCCT GCATTGCCTGGTTCTACAGTAGTACCGTTTACAGGGATGCAATCCGCGGTTTCCAAGAACATGTTGGAGAGTCTTTCGGTGCCTACTTTCCGAGTTGGAT ATCCGATCACAACGGATGCTCTTGATGCCTTATATTTGAAGGTGAAAGCAAAGGGTGTGACCATGACTGCGTTGTTGGCAAAGGCTGCAGCAATGGCACT TGCCCAGCACCCAGTTGTTAATGCCAGCTGCAAAGATGGAAAGAGTTTTACTTACAACAGTAACATTAACATTGCTGTGGCAGTGGCTATCAATGGCGGG TTGATAACTCCTGTTCTTCAGGATGCTGATAAGCTGGACCTTTATCTATTATCACAAAAGTGGAAAGAGTTGGTCGAGAAGGCCCGAGCTAAGCAACTTC AGCCCCAAGAGTACAATTCAGGTACTTTCACTCTATCCAATCTGGGAATGTTTGGAGTGGATAGATTCGATGCTATTCTGCCCCCTGGCCAAGGTGCAAT CATGGCTGTTGGAGCCTCAAAGCCTACTGTAATTGCTGATGCAGAGGGGTTCCTCAGTGTGAAAAACAAAATGCAGGTGAACGTAACAGCGGATCATCGG ATTGTCTACGGTGCTGACTTGGCTGCCTTCCTCCAGACTTTCTCAAAGATTATTGAAAACCCTGAAAGCCTCACATTGTAG
AA sequence Show only first row Show all	>Lus10041467 pacid=23147025 polypeptide=Lus10041467 locus=Lus10041467.g ID=Lus10041467.BGIv1.0 annot-version=v1.0 MPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAPIGLLAETEADIAEAKAKAAAASGGSSATASAPTP AASPAASPIPPVAAAPPPPPPAADGPRKIVLTPYAKKLAKQNKVDISKVVGTGPYGRITPGDIEAAAGIVPKQSVAAPAAAQPATAAAPAKAAPAAPSTP ALPGSTVVPFTGMQSAVSKNMLESLSVPTFRVGYPITTDALDALYLKVKAKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSNINIAVAVAINGG LITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPQEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVIADAEGFLSVKNKMQVNVTADHR IVYGADLAAFLQTFSKIIENPESLTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	0	1
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	1.4	0.9391
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	2.0	0.9301
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	2.4	0.9245
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	4.2	0.9306
AT2G01720			Ribophorin I (.1)		Lus10023524 [exp]	4.7	0.9017
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	4.9	0.8969
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	4.9	0.9386
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	5.1	0.8944
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	5.7	0.9189
AT3G63430			unknown protein		Lus10018750 [exp]	5.8	0.9049

Compare expression of checked genes

Lus10041467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.