Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13340 226 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 159 / 1e-43 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 161 / 2e-43 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 155 / 1e-40 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 146 / 4e-40 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT4G29440 146 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 117 / 1e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 100 / 5e-23 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 96 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 90 / 4e-19 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034303 [exp] 449 / 4e-156 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 239 / 3e-75 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017592 [exp] 210 / 5e-64 AT1G13340 178 / 3e-52 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017591 [exp] 189 / 2e-57 AT1G13340 158 / 3e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 167 / 1e-46 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 166 / 6e-46 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 164 / 9e-46 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 165 / 1e-45 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10000978 [exp] 161 / 1e-42 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127000 [exp] 296 / 3e-96 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 242 / 3e-77 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 251 / 8e-77 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 165 / 3e-45 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 161 / 3e-44 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 165 / 5e-44 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 153 / 6e-43 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 159 / 7e-43 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G135700 [exp] 105 / 3e-24 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 102 / 2e-23 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10041468 pacid=23147009 polypeptide=Lus10041468 locus=Lus10041468.g ID=Lus10041468.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGCTGGACGCAATTCTAGGAAGGAACAACTTCAAAACATACAAGTTCAAGGCACTCTCCAACCTCGCCGTTTCTCGCCTTGCCATCTTCA AGAACCAGCGTCAAGCTAAGCTAAACCAAGCTCGCTCCGACGTCCTCGATCTCCTCCGCCTCGGCCACCGTGACCGTGCCCTCCTACGGGCGGAGCATGT GATCAAGGAGCAGAACATGTTGGAAGCGTATGGCATGATGGAGGATTACTGCAACCTTCTTGTGGAGAGGGTTCATCTCCTCGAACAAGAAAGGGTATGC CCTGATGAACTGAAGGAGGCGATTTCGAGTTTGCTCTTTGCATCGTCCAGGTGCGGTGAATTTCCCGAGCTTCACGAGATGCGTCTGGTGTTCACTTCGC GGTATGGTAAGGAGTTTGCTGCTAGCGCTGTTGAGTTGCGCAACAATTGTGGAGTCAATCGTAGGATGATGCAGAAGATGTCTACTAGGCAGCCTGACCT GGAGACCAAAACCAAACTGTTGCGAGAGATTGCATCTGAGAACAATATTGCCTTTGAACTAGATGATGAAACTTCTCCTCCTTCTTTGACAACAGCAACC TACAAGGAAAAGTTCAAAGCTGGCAGAAAGGAAGAAGAGGGTGAGTCATCGGTTGCAGCTGAAGAAATTGGGAGAAATGATGATCTCACCGATTCGGTGA GAGCGAGGAGGAAGTATAAGGATGTAGCTGAAGCAGCTCAGGCAGCATTCAAATCGGCTGCCTATGCAGCAGAAGCAGCGAGAGCTGCCGTTGAACTCTC TCGATCCGATCCTCGTCATCCTGGCAGCAGCAGCAGCAGCAGCCACCACAGTTCTGAAGATGATGATGGCAATGTTGTTAATGATTCTGATGATGGTAAG AGGCAGCTACTTAGCCAATATGAAGATGGCATAGATTCTGAATCTGGGGATGAGGAACAGGATGTTGAGATCAAAGCTGGTTTGGAAGTCAAGTCATCTT CTTCGAGCCTTCATCCTGAGAATCTGGCCAGAAAACTGGACAGAGATATCGAAATCAATTATAGTGATATTGAAGAGGATGACGATCATCAGAACACAAA TGTAGCGAAATCTGATATGCTTGGAAGCGATGAGGGAGCAGCAGCAAATGCCGATACCAGTGAGCAAATCCCCACGGTTATACAAACAGGGGTGAAGGTG GAATCAGTAGATGTTATATACCCGAATCCACAAGGCTCTAGAGAATCAAGAACTACACGCACCTTGAACATACTCAAGGCACCATTCTCTGTCAGGACCA CCAGACACGTCCGTGGATACTGA
AA sequence Show only first row Show all	>Lus10041468 pacid=23147009 polypeptide=Lus10041468 locus=Lus10041468.g ID=Lus10041468.BGIv1.0 annot-version=v1.0 MGKKLDAILGRNNFKTYKFKALSNLAVSRLAIFKNQRQAKLNQARSDVLDLLRLGHRDRALLRAEHVIKEQNMLEAYGMMEDYCNLLVERVHLLEQERVC PDELKEAISSLLFASSRCGEFPELHEMRLVFTSRYGKEFAASAVELRNNCGVNRRMMQKMSTRQPDLETKTKLLREIASENNIAFELDDETSPPSLTTAT YKEKFKAGRKEEEGESSVAAEEIGRNDDLTDSVRARRKYKDVAEAAQAAFKSAAYAAEAARAAVELSRSDPRHPGSSSSSSHHSSEDDDGNVVNDSDDGK RQLLSQYEDGIDSESGDEEQDVEIKAGLEVKSSSSSLHPENLARKLDRDIEINYSDIEEDDDHQNTNVAKSDMLGSDEGAAANADTSEQIPTVIQTGVKV ESVDVIYPNPQGSRESRTTRTLNILKAPFSVRTTRHVRGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	1.0	0.8486
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10006279 [exp]	3.0	0.7585
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	3.0	0.7932
AT1G52343			unknown protein		Lus10035888 [exp]	4.5	0.7585
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	5.3	0.7641
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	7.1	0.8039
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	7.4	0.7537
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	8.8	0.7229
AT5G18260			RING/U-box superfamily protein...		Lus10035820 [exp]	10.8	0.6863
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	11.4	0.7826

Compare expression of checked genes

Lus10041468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.