Plant FIBer expression Database

Lus10041472 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25800 867 / 0 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2)
AT1G13320 815 / 0 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3)
AT1G25490 799 / 0 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034299
[exp]
971 / 0 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Lus10035038
[exp]
887 / 0 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Lus10021695
[exp]
885 / 0 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G127500
[exp]
861 / 0 AT3G25800 1086 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Potri.012G062700
[exp]
838 / 0 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Potri.008G118500
[exp]
835 / 0 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Potri.004G095900
[exp]
43 / 0.0006 AT5G16210 1578 / 0.0 HEAT repeat-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF02985 HEAT HEAT repeat
Representative CDS sequence
>Lus10041472 pacid=23146642 polypeptide=Lus10041472 locus=Lus10041472.g ID=Lus10041472.BGIv1.0 annot-version=v1.0
ATGGCCATGGTTGACGAACCACTATATCCTATTGCTGTCCTCATAGACGAGCTCAAGAATGATGACATCCAGCTACGACTGAACTCAATTCGTAGACTGT
CAACGATTGCACGTGCTCTTGGCGAGGAGCGAACCCGTAAGGAGTTAATTCCTTTCCTGAGTGAAAACAATGATGATGATGATGAGGTACTCCTTGCAAT
GGCCGAAGAGTTGGGAGTGTTTATTCCATATGTTGGTGGAATGGAGCATGCCCATGTTTTGCTGCCACCTCTGGAGACATTGTGCACTGTTGAGGAGACA
TCTGTAAGAGACAAAGCCGTCGAGTCATTGTGTAGGATTGGGTCTCAAATGAGGGAAAGTGATTTGGTTGATTGGTTCATCCCCCTTGTCAAGAGATTGG
CTGCTGGGGAATGGTTTACTGCCCGTGTTTCTTCTTGTGGTCTATTCCATATTGCTTATCCCAGTGCACCAGATATGCTGAAGGCTGAATTGCGCTCCAT
ATACAGTCAGCTCTGTCAAGATGACATGCCAATGGTTAGGAGGGCTGCTGCAACCAATCTTGGGAAGTATGCTGCCACTGTTGAAGCTGCACATCTGAAG
GCTGATGTCATGTCAATGTTTGACGATCTTACCCAAGATGATCAAGATTCTGTACGTTTGTTGGCTGGTGTGGGGTGTGTTGCTGACAAATCATGGCGTG
TACGTTACATGGTTGCAAACCAATTGTATGAACTTTGTGAAGCTGTGGGGCCTGAGCCCACCAAGTACATTCCTAATCTGAAACAATTCAGCTGTTATAT
CTTTTACTGTTGGACGGACTTGGTACCTGCATATGTGCGGTTACTTCGTGATAACGAGGCAGAAGTGCGTATTGCTGCTGCTGGAAAAGTAACTAAATTC
TGTCGCATCTTGACCCCCGAACTAGCAGTTCAGCACATTCTTCCTTGTGTGAAGGAACTCTCGTCAGATTCTTCCCAGCATGTCCGTTCTGCTTTGGCTT
CAGTGATAATGGGAATGGCTCCTGTATTAGGCAAGGATGCTACAATAGAGCAGCTGCTTCCGATATTTCTTTCACTTTTGAAAGATGAATTTCCTGATGT
GCGGCTCAACATTATAAGCAAGCTTGATCAAGTGAATCAGGTTTGCTCAATTCGTGATGCTGCTGCTAATAATTTGAAGCGCCTTGCTGAAGAATTTGGT
CCTGAGTGGGCAATGGAGCACATAATCCCACAGGTTCTTGAACTGTTCAACAACCCCCACTACTTATACAGGATGACCATTCTCCGTGCTAGCTCTCTCA
TTGCTCCTGTGATGGGCGCTGAGATAACATGTTCAAAACTGCTGCCGCCGATTATCAATGCAGCAAAGGACAGGGTACCCAACATCAAGTTCAATGTGGC
AAAGGTGCTACAGACCCTCATTCCGATCGTTGATCAGTCCGTGGTAGAGAAGTCGATTCGTCCTGCTCTAGTGGAGCTAAGCGAGGACCCTGACGTCGAC
GTGCGTTTCTTTGCCAATGAAGCACTTCATGCGATCGACAACACGATGATGTCTGGCTAG
AA sequence
>Lus10041472 pacid=23146642 polypeptide=Lus10041472 locus=Lus10041472.g ID=Lus10041472.BGIv1.0 annot-version=v1.0
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGMEHAHVLLPPLETLCTVEET
SVRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPDMLKAELRSIYSQLCQDDMPMVRRAAATNLGKYAATVEAAHLK
ADVMSMFDDLTQDDQDSVRLLAGVGCVADKSWRVRYMVANQLYELCEAVGPEPTKYIPNLKQFSCYIFYCWTDLVPAYVRLLRDNEAEVRIAAAGKVTKF
CRILTPELAVQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVCSIRDAAANNLKRLAEEFG
PEWAMEHIIPQVLELFNNPHYLYRMTILRASSLIAPVMGAEITCSKLLPPIINAAKDRVPNIKFNVAKVLQTLIPIVDQSVVEKSIRPALVELSEDPDVD
VRFFANEALHAIDNTMMSG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25800 PP2AA2, PR65, P... protein phosphatase 2A subuni... Lus10041472
[exp]
0 1
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Lus10012697
[exp]
3.6 0.9213
AT1G12120 Plant protein of unknown funct... Lus10024611
[exp]
7.9 0.8973
AT1G74680 Exostosin family protein (.1) Lus10002060
[exp]
8.6 0.9074
AT1G16780 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase fa... Lus10034800
[exp]
11.0 0.8787
AT5G65750 2-oxoglutarate dehydrogenase, ... Lus10015205
[exp]
16.0 0.8953
AT5G12970 Calcium-dependent lipid-bindin... Lus10031244
[exp]
16.7 0.8828
AT2G20360 NAD(P)-binding Rossmann-fold s... Lus10022859
[exp]
19.8 0.8700
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Lus10034493
[exp]
23.9 0.8791
AT2G26140 FTSH4 FTSH protease 4 (.1) Lus10013521
[exp]
24.5 0.8778
AT1G76340 GONST3 golgi nucleotide sugar transpo... Lus10015806
[exp]
27.7 0.8882

Lus10041472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.