Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 249 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 234 / 2e-74 ATCXE17 carboxyesterase 17 (.1) AT5G62180 137 / 2e-37 ATCXE20 carboxyesterase 20 (.1) AT1G49640 122 / 8e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 120 / 8e-31 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 116 / 7e-30 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 117 / 8e-30 ATCXE18 carboxyesterase 18 (.1) AT3G48700 115 / 2e-29 ATCXE13 carboxyesterase 13 (.1) AT3G48690 114 / 5e-29 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 113 / 1e-28 ATCXE5 carboxyesterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017587 [exp] 225 / 5e-71 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 224 / 1e-70 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10002019 [exp] 144 / 4e-40 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 142 / 1e-39 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10024087 [exp] 138 / 2e-37 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10036168 [exp] 125 / 4e-33 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027909 [exp] 121 / 1e-31 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 120 / 3e-31 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 117 / 5e-30 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118400 [exp] 288 / 2e-95 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 287 / 4e-95 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.017G113700 [exp] 273 / 1e-89 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 261 / 7e-85 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.009G155800 [exp] 135 / 6e-37 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G028300 [exp] 135 / 8e-37 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 127 / 9e-34 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G143100 [exp] 125 / 1e-33 AT1G49660 235 / 1e-76 carboxyesterase 5 (.1) Potri.004G142900 [exp] 126 / 2e-33 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G253300 [exp] 125 / 3e-33 AT5G16080 173 / 9e-52 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041473 pacid=23146999 polypeptide=Lus10041473 locus=Lus10041473.g ID=Lus10041473.BGIv1.0 annot-version=v1.0 ATGACAGTAGGTCGTCTCACTTCTGATAATAATACCAATTTACCAACCATCGCGTATCATCGCCGGCCAAGATTCCCGGTGGACGAAATCCCGGGGTTAA TCAAAGTCTACAGCGACGGCCACGTAGAGAGGCCACACATCGTGCCAAGTGTCCCCGCCACCGTACTGCCTCCAGACCTCAACAACCTCCTCACTTCCCG AGATGTTCTCCTAGACAATTTCACAAACACCTTCTGGGCAAGATTCTACCTCCCCAAAATCAATACCGATGATTGCAATAATGTTAAACTTCCTCTACTC GTCTATTTTCACGGCGGCGGGTTTTGCTTGGGATCCCCATCCTGGAGATGCTACCACGACTTCCTCGCCAGGCTGGCGGTCAACGCCGGCTGCTTGATCA TGTCGGTTAATTACCGTTTGGCACCCGAGAACCCTCTCCCGGCTGCTTACGACGACGGAGTGAAGTCCCTCCTCTGCCGCTGCGACTTCTCCCGGGTGTT CATCGGCGGGGATAGTGCCGGGGCCAACATAGCCTACAACGTCATGGATCGGCTAGGCTCGAGCCGAGCCGATGAAGTGCTGAGACCTTTGGCTCTGAGA GGGATGGTGTTGATTCAGCCGTTTTTCGGAGGGCAGGCTCGGACGGATTTTGAGAAGAAGAATATTAACTCGGCTGAATCGGCTCGGTCATCGGCGCTGA CGTTATTCGGTTCTGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGTGGGGAGGAGGATGATGTGAAGCGGCGGCGGCGGCGGGCGGCGTTGATTGTGTTTGTGGCGGAG GAGGATGTGTTGAGAGATCGGGATTTGGAATTTGGTGGAGCGTTTGGGAAGAGAGCGGAGGTAGTTGTTCATAGAGGTGTGGGACATGCGTTTCAGGTTC TGGGGAAGACTCAAGTGGCATACACCCGTACCATGGAAATGATCTCTCAAATCAAAATGTTTATTAATTAG
AA sequence Show only first row Show all	>Lus10041473 pacid=23146999 polypeptide=Lus10041473 locus=Lus10041473.g ID=Lus10041473.BGIv1.0 annot-version=v1.0 MTVGRLTSDNNTNLPTIAYHRRPRFPVDEIPGLIKVYSDGHVERPHIVPSVPATVLPPDLNNLLTSRDVLLDNFTNTFWARFYLPKINTDDCNNVKLPLL VYFHGGGFCLGSPSWRCYHDFLARLAVNAGCLIMSVNYRLAPENPLPAAYDDGVKSLLCRCDFSRVFIGGDSAGANIAYNVMDRLGSSRADEVLRPLALR GMVLIQPFFGGQARTDFEKKNINSAESARSSALTLFGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSGEEDDVKRRRRRAALIVFVAE EDVLRDRDLEFGGAFGKRAEVVVHRGVGHAFQVLGKTQVAYTRTMEMISQIKMFIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	0	1
AT1G49000			unknown protein		Lus10032453 [exp]	2.2	0.9262
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	3.2	0.9100
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	3.9	0.9193
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	4.5	0.9252
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	5.5	0.9080
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	6.3	0.9023
					Lus10042011 [exp]	7.5	0.9143
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	9.5	0.8987
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	11.5	0.8960
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	12.5	0.8949

Compare expression of checked genes

Lus10041473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.