Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68640 366 / 1e-122 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06950 347 / 7e-117 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 341 / 5e-115 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 323 / 2e-107 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06839 286 / 9e-92 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 279 / 6e-90 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G10030 261 / 4e-83 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 253 / 2e-80 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 251 / 3e-79 bZIP bZIP transcription factor family protein (.1) AT1G22070 251 / 8e-79 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034296 [exp] 568 / 0 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10024140 [exp] 368 / 8e-125 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 366 / 2e-124 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 354 / 1e-119 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10004876 [exp] 290 / 4e-92 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 288 / 2e-91 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10035499 [exp] 280 / 4e-90 AT5G06839 377 / 1e-129 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 281 / 1e-88 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 273 / 1e-86 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118300 [exp] 434 / 2e-149 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.001G029800 [exp] 360 / 6e-120 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 357 / 9e-119 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 354 / 1e-117 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 351 / 2e-116 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G058800 [exp] 314 / 1e-101 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 296 / 9e-95 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 284 / 6e-90 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 283 / 9e-90 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 263 / 2e-83 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10041475 pacid=23146727 polypeptide=Lus10041475 locus=Lus10041475.g ID=Lus10041475.BGIv1.0 annot-version=v1.0 ATGCAAACATCATCATCTCATCATCATCATCATCCCATCCCTTCTGCTATGTTCCGGTCCTCGGAAATGTACAGCAGTAGTACTCCTCTACTTCCACCAT CTTTCTTTTTCAGAGGAGCAGCAGCACAAGAAGAAGAAGAGGGTAGTAGAGTCCAAACGAGGTTTGGTGATATTGGAGAGCTCGATCATCATCATCATCA TCCTCCTCAACCAACTTTCCATCACAACCATGCTTTTGATTTAAGCCCAAGCTCCTCCTCCATGTTCAGCCTGAAATCTGGGAATGTTGTCAATGCTAAT ATTGTTCCAAGCAGCAGCAGCAGCTTGCTTCTCCCTTCTCCATTCAACACGAGTATTGTTGGGTGCTTGGACACAGGGCAGCAGCAGTACATGTATGGGA AAGGGACAAGTAGCTTTGGCAATATTGACAACAACAACAACTGGGGAGACTCTAATTCGGGCGGGATGGCTGCAGATACTACTGACACTTCCACAGATGT TGACACTACTGATGATCGACACCACCATCACCAGCAGCAACTTGGTGGCCAGCATGGCTCAGTTGTGGTGGTGGATTCCATTGATCAATCCAACTGCAAA GTTGATGACCAAAAGACAAGTCGAAGGTTGGCTCAAAATCGCGAAGCAGCACGAAAGAGCCGGCTTAGGAAGAAAGCTTATGTCCAGCAACTTGAGAACA GTCGTCTGAAGCTTACCCAACTTGAGCAAGACCTACAACGTGCTCGCCAACAGGGAAATTTCACGGGTGATCATGGCCATTCAGTAGCTGGAAATGATGC ATTGGCATTTGACATGGACTATCAACGCTGGCTCGGAGAACATCAGAGGCTGATTAACGACCTAAGATCAGCAGCGAATTATCTGACAAGCGACGACAAG CTGCGCATTCTCGTAGATGGAGTGATGAGCCACTATGCCGAGATATTCAGGCTAAAGAGCATTGCTGCAAAGGCTGACGTGTTTCACATTCTGTCAGGCT TATGGAAGACTCGTGCTGAGCGATGTTTCATGTGGATTGGTGGATTTCGCTCTTCCGAACTTCTCAAGATAGTAGTGAACCAACTCAAACCGTTGACCGA TCAACAGTTGGTAGGGATATGCAATCTGCAGCAGTCATCCCAGCAGGCAGAAGATGCATTATCACAAGGTATGGAAGCATTGCAACAGTCACTTGTGGAC TCACTTTCTTCGACCTCTCTCCGTCCCGGTGCGGCTCCTGGTTGTCGTGTCAATGTGGCTGATTACATGGCCCAGATGGCTATTGCAATGGGCAAACTCA CCACCCTTGAGAACTTCCTTCATCAGGCTGACCTTCTGCGGCAGCAGACATTGCAACAGCTGCATCGAATACTGACGACACGCCAGGCTGCAAATGCTCT TCTTGTTATCAGTGACTACACTTCTCGTCTCAGGGCCCTTAGCTCGCTATGGTTGGCTCGACCTAGGAACCTGAACGATCGATCCACAAATGTTGTGTAA
AA sequence Show only first row Show all	>Lus10041475 pacid=23146727 polypeptide=Lus10041475 locus=Lus10041475.g ID=Lus10041475.BGIv1.0 annot-version=v1.0 MQTSSSHHHHHPIPSAMFRSSEMYSSSTPLLPPSFFFRGAAAQEEEEGSRVQTRFGDIGELDHHHHHPPQPTFHHNHAFDLSPSSSSMFSLKSGNVVNAN IVPSSSSSLLLPSPFNTSIVGCLDTGQQQYMYGKGTSSFGNIDNNNNWGDSNSGGMAADTTDTSTDVDTTDDRHHHHQQQLGGQHGSVVVVDSIDQSNCK VDDQKTSRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQDLQRARQQGNFTGDHGHSVAGNDALAFDMDYQRWLGEHQRLINDLRSAANYLTSDDK LRILVDGVMSHYAEIFRLKSIAAKADVFHILSGLWKTRAERCFMWIGGFRSSELLKIVVNQLKPLTDQQLVGICNLQQSSQQAEDALSQGMEALQQSLVD SLSSTSLRPGAAPGCRVNVADYMAQMAIAMGKLTTLENFLHQADLLRQQTLQQLHRILTTRQAANALLVISDYTSRLRALSSLWLARPRNLNDRSTNVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	0	1
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	1.0	0.9162
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	1.7	0.8853
AT4G37810			unknown protein		Lus10011570 [exp]	5.7	0.8213
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	6.0	0.7971
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	6.0	0.8301
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	7.1	0.8258
					Lus10038805 [exp]	9.0	0.7518
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	10.2	0.8380
AT1G32730			unknown protein		Lus10040132 [exp]	11.5	0.8396
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	11.7	0.7903

Compare expression of checked genes

Lus10041475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.