Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25500 590 / 0 Plasma-membrane choline transporter family protein (.1.2.3) AT5G13760 127 / 4e-31 Plasma-membrane choline transporter family protein (.1) AT3G03700 74 / 6e-14 Plasma-membrane choline transporter family protein (.1) AT3G04440 74 / 7e-14 Plasma-membrane choline transporter family protein (.1) AT4G38640 47 / 3e-05 Plasma-membrane choline transporter family protein (.1) AT5G17830 46 / 5e-05 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034295 [exp] 943 / 0 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10005331 [exp] 128 / 1e-31 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10039585 [exp] 127 / 4e-31 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 45 / 0.0001 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10025051 [exp] 44 / 0.0002 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 44 / 0.0003 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118200 [exp] 659 / 0 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.010G128100 [exp] 652 / 0 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.001G261900 [exp] 129 / 7e-32 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 122 / 9e-30 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 76 / 2e-14 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 69 / 3e-12 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.009G132900 [exp] 49 / 9e-06 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.011G121100 [exp] 46 / 6e-05 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 45 / 0.0001 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10041476 pacid=23146778 polypeptide=Lus10041476 locus=Lus10041476.g ID=Lus10041476.BGIv1.0 annot-version=v1.0 ATGAGCGAGTTCCCCAGTTCCAGAAGCTCCTCGTCTGCTTCCGCTTCTACCGCTGACCAGATAGCGGGGAGGAGCCTCAACAGTCAAGCACTGGCTCTTG ACGTGCCCCGCAAATGGCATGATGTTTTCTGGTCAGGGATCTTTTCAGTTCATCTCGTTGGAATCGGGTTTGCTCTTGCGATCTTGGGGCTCAGTAGCTT CAGGGAACTGGATAGGTTTAATTTTGATAGATATCGCAATGGGAAGTCGCATGGGTGGGGATATACTGAGGATTACTGGCCTATCTATGCTCTGGCTGGC GGAATTGGGCTTCTACTCGGCTCCGGTTGGTTGTTGATGCTTGGTTCGTTTGCAAATCAGATGATGAACATCTCAGTTCATATCTTGACTACTTACCTTG CCGTCGTTAGTGTCCTCTGTTTCTGGTGTGAGCAGTTTTTCTGGGGTGTCACCTTTGCAGTCGGCGCCGCCTTACAGTTTTTGTATGTTATATCCGTCAT AGACCGACTGCCATTTACCATGCTGGTTCTGCGAAAGTCAGTGAAGATGGTGTGGAGTCTTCCTGATGTGATGAGAGTTGCATATGCTTTCATGGTTATA ATGCTATTATGGATGGGAATATGGTCTTTTGGAGCTGCCGGTGTGCTGGCTTTGAACCTGCCTGATGGTGGCGGCTGGTGGCTTCTTTTGGTTTTGTCAA TAAGCTTATTTTGGACGGGTGCAGTGATATGCAATACGGTACATGTTATAGTTTCCGGAATGGTGTTCCTTGTTCTTATCCACGGTGGAAGAGAAGCAGC ATCGATGCCTCCCAAATCCTTGATGAAGTCTACAAGATATGCTCTGACGACATCTTTTGGCAGTATTTGCTACGGATCGCTCTTCACAGCTGCAATTCGA ACTTTGCGTTGGGAGATCAGAGGATTGAGGTCAAAGATAGGCAAGAATGAGTGCTTGCTCTGCTGCGTTGATCTTTTGTTTCATCTTGTGGAGACTCTTG TCCGTTTCTTCAACAAGTATGCCTATGTCCAGATAGCAGTATATGGGAAAGGTTTCAATCGTTCGGCAAGGGATGCGTGGGAGCTATTTCAGTCAACTGG AGTCGAGTCTCTGGTTGCGTATGACTGTTCAGGTGCTGTTCTATTGATGGGAACAATATTATGCGGGCTTATAACAGGAACCTGTGCCGCAGTTTGGACT CATTTCAAGTGGGAGGCTAAGAATGAGCGAATGCTCATGGTGGGATCCACTGCAATGCTGATGGGGATGGTCTTGTTTGTGGTAGTGTGTGAACGAATAA CGAATAGTGAGGGGTTTTTTGGTCAGGTTGGAGTAGTAATGGTGGTAGTGGAAAGTGCGGCAACGTCAATGTACATATGCTATGCAGAAGACCCGTTGCT AATCCACAGATGGGACGCAGAATTCTTCGACCAGTTATCAGAAACGCTACACCTGCGGCTTAGGCACAGAAGTGCTCGTGGACGAGAAGTATTGACCCAT AATAGATTTGATGTTAATAATGCACCAGAATCTGTATCTCTTTGA
AA sequence Show only first row Show all	>Lus10041476 pacid=23146778 polypeptide=Lus10041476 locus=Lus10041476.g ID=Lus10041476.BGIv1.0 annot-version=v1.0 MSEFPSSRSSSSASASTADQIAGRSLNSQALALDVPRKWHDVFWSGIFSVHLVGIGFALAILGLSSFRELDRFNFDRYRNGKSHGWGYTEDYWPIYALAG GIGLLLGSGWLLMLGSFANQMMNISVHILTTYLAVVSVLCFWCEQFFWGVTFAVGAALQFLYVISVIDRLPFTMLVLRKSVKMVWSLPDVMRVAYAFMVI MLLWMGIWSFGAAGVLALNLPDGGGWWLLLVLSISLFWTGAVICNTVHVIVSGMVFLVLIHGGREAASMPPKSLMKSTRYALTTSFGSICYGSLFTAAIR TLRWEIRGLRSKIGKNECLLCCVDLLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVESLVAYDCSGAVLLMGTILCGLITGTCAAVWT HFKWEAKNERMLMVGSTAMLMGMVLFVVVCERITNSEGFFGQVGVVMVVVESAATSMYICYAEDPLLIHRWDAEFFDQLSETLHLRLRHRSARGREVLTH NRFDVNNAPESVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	0	1
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	4.5	0.8667
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	5.3	0.8812
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	7.2	0.8803
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	11.6	0.8754
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	15.7	0.8549
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	15.8	0.8527
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	15.8	0.8623
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	16.1	0.8547
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	19.6	0.8104
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	23.8	0.8538

Compare expression of checked genes

Lus10041476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.