Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25520 304 / 1e-105 Uncharacterized protein family (UPF0016) (.1) AT1G68650 300 / 3e-104 Uncharacterized protein family (UPF0016) (.1) AT5G36290 163 / 2e-49 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT4G13590 113 / 9e-30 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 85 / 4e-19 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034293 [exp] 368 / 5e-131 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10035040 [exp] 358 / 2e-124 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 162 / 4e-49 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10020195 [exp] 140 / 1e-41 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10023685 [exp] 124 / 1e-33 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 123 / 2e-33 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10021697 [exp] 108 / 7e-29 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1) Lus10032330 [exp] 81 / 1e-17 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 55 / 1e-08 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117900 [exp] 332 / 1e-116 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 331 / 1e-116 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 331 / 2e-116 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G053400 [exp] 159 / 5e-48 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 159 / 6e-48 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 117 / 2e-31 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 117 / 2e-31 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 93 / 4e-22 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10041478 pacid=23146935 polypeptide=Lus10041478 locus=Lus10041478.g ID=Lus10041478.BGIv1.0 annot-version=v1.0 ATGACTATTCTGTCCGAGATCGGCGACAAGACCTTCATCGCCGCCGCGATCTTGGCGATGCGCCATCCCAGGAGGCTAGTTTTGACAGGTTGCCTAAGTG CGTTGATCGTCATGACGATCCTTTCTGCTGTTGTTGGTTGGGCTGCTCCAAATCTGCTCTCTCGTACATGGACCCATCATATAACAACCGTATTGTTTTT TGGGTTTGGGCTTTGGTCCTTGTGGGATGGATTTAAAGAAAATGGGGAGGCTGAGGAATTGGCTGAAGTTGAAGCAAAATTGGATGCTGACTGGAAGTCT AGTGCTGGAACAACCCAGGAAGATAGCAAGGCTGATGATGACTTAAAAAAGAAATCACGACCATTTCTGGCTCAGTTTTTCTCACCGATATTGTTAAAGG CATTCTCTATTACGTTCTTTGGTGAATGGGGCGACAAGAGCCAGCTGGCTACAATTGGTTTGGCTGCTGATGAAAACCCATTTGGTGTTGTTCTTGGCGG GATTGTAGGACAAGCATTGTGCACAACTGCTGCGGTTGTAGGAGGAAAGAGCTTGGCTTCACAGATATCTGAAAGAATGGTTGCCCTCTCAGGCGGAATT CTTTTCATTGTTTTTGGTGTCCAATCTTTCCTTTCAGGCGTCAACTGA
AA sequence Show only first row Show all	>Lus10041478 pacid=23146935 polypeptide=Lus10041478 locus=Lus10041478.g ID=Lus10041478.BGIv1.0 annot-version=v1.0 MTILSEIGDKTFIAAAILAMRHPRRLVLTGCLSALIVMTILSAVVGWAAPNLLSRTWTHHITTVLFFGFGLWSLWDGFKENGEAEELAEVEAKLDADWKS SAGTTQEDSKADDDLKKKSRPFLAQFFSPILLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIVGQALCTTAAVVGGKSLASQISERMVALSGGI LFIVFGVQSFLSGVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25520			Uncharacterized protein family...		Lus10041478 [exp]	0	1
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	49.5	0.6395
AT2G37980			O-fucosyltransferase family pr...		Lus10040236 [exp]	101.8	0.6223
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	223.8	0.5945
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	260.0	0.5831

Compare expression of checked genes

Lus10041478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.