Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68660 235 / 1e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034292 [exp] 326 / 2e-116 AT1G68660 234 / 3e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10035041 [exp] 240 / 2e-82 AT1G68660 247 / 2e-85 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117800 [exp] 243 / 9e-84 AT1G68660 271 / 1e-94 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G128500 [exp] 226 / 5e-77 AT1G68660 256 / 1e-88 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G096600 [exp] 55 / 9e-10 AT1G68660 60 / 1e-11 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.008G145500 [exp] 54 / 1e-09 AT1G68660 62 / 8e-13 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02617 [flax] [poplar] ClpS ATP-dependent Clp protease adaptor protein ClpS
Representative CDS sequence Show only first row Show all	>Lus10041479 pacid=23147033 polypeptide=Lus10041479 locus=Lus10041479.g ID=Lus10041479.BGIv1.0 annot-version=v1.0 ATGGTGAGTGCGTTGTGCGGGAGAATCAGCCTCTCCCCTCATCCCTTATTCAATCCCAACCCTCCAGGTGAGAGGAACTCTCTACGCAGAGGACGATGTA ATAACCATCGGGTTCTCATGGCAGCATCAGCTCCAGCATTGAGTAAAGGTGGAGGAGTACTGGATAGACCAGTCAAAGAGAAAACCAAGCCCGGGCGTGA TTCTGAGTTTGACTTGAGGAAATCTAAGAAAATGTCTCCCCCGTATCAAGTGATGCTGCACAACGACAACTTCAACAGACGGGAATACGTGGTCCAAGTA CTGATGAAGGTCATCCCAGGGATGACAGTGGACAATGCAGTAAATATAATGCAAGAGGCACACATCAACGGCTTGGCGGTGGTGATTATATGCGCCCAGG GCGATGCGGAAGACCATTGCACGCAGCTGAGAGGGAACGGGCTTATGAGTTCAATTGAACCTGCAAGCGGTGGCGGATGTTAG
AA sequence Show only first row Show all	>Lus10041479 pacid=23147033 polypeptide=Lus10041479 locus=Lus10041479.g ID=Lus10041479.BGIv1.0 annot-version=v1.0 MVSALCGRISLSPHPLFNPNPPGERNSLRRGRCNNHRVLMAASAPALSKGGGVLDRPVKEKTKPGRDSEFDLRKSKKMSPPYQVMLHNDNFNRREYVVQV LMKVIPGMTVDNAVNIMQEAHINGLAVVIICAQGDAEDHCTQLRGNGLMSSIEPASGGGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	0	1
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	1.0	0.9752
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	2.4	0.9410
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	5.5	0.8926
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	6.0	0.9189
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	7.7	0.9229
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	8.7	0.8669
AT1G28140			unknown protein		Lus10041480 [exp]	8.8	0.8492
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	9.2	0.8786
AT5G52420			unknown protein		Lus10027493 [exp]	9.8	0.8866
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	9.8	0.9073

Compare expression of checked genes

Lus10041479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.