Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28140 308 / 4e-106 unknown protein AT2G01175 79 / 4e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034291 [exp] 429 / 5e-154 AT1G28140 343 / 2e-119 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100300 [exp] 353 / 4e-124 AT1G28140 368 / 3e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10063 [flax] [poplar] DUF2301 Uncharacterized integral membrane protein (DUF2301)
Representative CDS sequence Show only first row Show all	>Lus10041480 pacid=23146625 polypeptide=Lus10041480 locus=Lus10041480.g ID=Lus10041480.BGIv1.0 annot-version=v1.0 ATGGAACCCTCAGCTTGCAACGCCGCTGGTAGCGATACCTCCTCCCAGACTTACAGAGGCGTTTATGGCCCTTGGACTGTCGAAGACTCTGACGTCCGTG AGGTGGTATCATACAGGGGAGGCTTAGTTACGGTAGCTTCGTCATTCGTAACAGCTGCATCGATTGCTTTCCTGCCGAACGACTCGCCGCTGAGTGCTAT AGTTGATCAAAACCTGGACTTTATATACTTTGCAGGAGCTGCTGGTTTAGGGGTGTCGTTGTTTCTGATTCACATCTATGTGACTCCGATTAAACGAACA CTTCAAGCGTTTTGGGGACTTGGGGTGATTGGTTCAATTGCCACGTACGCAAGCCTAGCTCGGCCAGCTGGCGTGGACTTGGTACACTATGTTGTTGAGA ACCCTGCAGCAATCTGGCTCGTTGGCCCTCTCTTTGCTGCCTTGACTGGCCTTGTTTTCAAGGAAGGTCTATGTTATGGGAAGCTGGAAGCTGGTGTTCT GACATTTATCATACCCACACTTCTAATTGGACATCTGAGTGGCATAATGGACGATGGAGTGAAACTAGGACTGCTAGCTTCATGGATGACACTCTTTGTG GTATTTGCTGGACGGAAGTTCACTCAACCCATTAAGGACGATATCGGGGATAAATCAGTGTTCATGTTCAATGCGATGTCAGAAGAAGAGAAGAAATTCT TGATCCAGAAACTTGAGCAGCAGCAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10041480 pacid=23146625 polypeptide=Lus10041480 locus=Lus10041480.g ID=Lus10041480.BGIv1.0 annot-version=v1.0 MEPSACNAAGSDTSSQTYRGVYGPWTVEDSDVREVVSYRGGLVTVASSFVTAASIAFLPNDSPLSAIVDQNLDFIYFAGAAGLGVSLFLIHIYVTPIKRT LQAFWGLGVIGSIATYASLARPAGVDLVHYVVENPAAIWLVGPLFAALTGLVFKEGLCYGKLEAGVLTFIIPTLLIGHLSGIMDDGVKLGLLASWMTLFV VFAGRKFTQPIKDDIGDKSVFMFNAMSEEEKKFLIQKLEQQQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28140			unknown protein		Lus10041480 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	1.0	0.8868
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	8.8	0.8492
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	9.4	0.8516
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	13.8	0.8423
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	17.3	0.8401
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	20.2	0.8435
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	20.3	0.8414
AT5G55570			unknown protein		Lus10008950 [exp]	27.1	0.8370
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	28.3	0.8319
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	31.2	0.8351

Compare expression of checked genes

Lus10041480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.