Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25540 740 / 0 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034282 [exp] 1152 / 0 AT1G25540 169 / 2e-43 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128600 [exp] 925 / 0 AT1G25540 793 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2) Potri.008G117700 [exp] 911 / 0 AT1G25540 780 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF11265 [flax] [poplar] Med25_VWA Mediator complex subunit 25 von Willebrand factor type A
Representative CDS sequence Show only first row Show all	>Lus10041483 pacid=23146681 polypeptide=Lus10041483 locus=Lus10041483.g ID=Lus10041483.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAACAGCTGATCGTGGCTGTAGAAGGCACTGCTGCTATGGGACCTTACTGGTCAACAATCGTCTGTGATTACTTGGAAAAGATCATCAGGA ACTTCTGCGGTAGCGACCTGACTGGTCAGAAAACCACTACATCTATTGCTGAGCTCTCTGTGGTTACATTTAACTCTCATGGATCCTATTCTGCATGTTT GGTGCAACGGAGTGGTTGGACGAGAGATGTTGACATCTTTCTTCAATGGTTATCATGCATACCATTTATTGGTGGTGGTTTTAGTGATGCTGCCATTGCA GAAGGGCTCTCTGAAGCGCTTATGATGTTCCAAGTTTCTTCTAATGGAAGCCAAAGTCAACAGAATTTGGATTGCCAAAGGCATTGCATCCTTGTTTCTG CAAGTAACCCTTATCCCTTGCCCACACCAGTGTATAGACCACAAATACAAAATTTGGATCAGAGTGATAACAGTGATATGCAGACAGAGAGTCGCTTATC TGATGCAGAAGCAGTCGCCAAATCATTTTCTCAGTGCTCTGTTTCTCTGTCAGTGATTTGTCCAAAGCAGCTTTCGAAACTTAGAGCCATCTACAATGTT GGGAAACGCACAAACCGAGGCACAGATCCACCTGTTGACACTGCCAAGAATCCCCATTTTCTTATTCTAATCTCTGGTAGTTTTGCGGAGGCTTGTGCTT CTCTGAACGGCCCTGGAGCTGCAAATGTACCTTCTACCCAGAGCCCAGTGAAAATGGATGTTTCTTCAGTTAATGCAGTTACAGGACATCCTCCTGCTCA AATTCCTTCAGCAAATGGCTCTCTAGTGAATCGAGCATCAATTTCTGCTGGAGGTGTTCCAGTTGCAACCGTAAAAGTTGAACCAAGTACAGTGACATCA TTAGCCGCTGGACCTGGCTTTCAACATCTTCCATCTGCTGCACGCCCAGCTGCTCAAGCTCCAAGTTTGCAAACTTCTTCTCCAATGTCAACAACTCAAG AAATGATCTCAAATGCTGACACTGTACAGGACTCAAAACCTGCAGTTAGTGGGGTGCCACAATCTGTTCGTCCAGTTGGTACAGCAGCAGCAAATGTCAG CATACTAAATAATCTTTCTCAAGCACGACAAGTGATTAACTCTGCAGCCTTAACAGGCGGGACATCGATGGGTCTTCCATCAATGAATCAAACTCCTGTT GGCATGCATATGTCAAATATGATATCAAGCGGAATGGCTTCATCAGTACCTGCTCAGACTGTTTTCTCATCTGCACAAAATCCAATAACTTCAATAGCCG GATCAGGGACTCTTCCTGCAACTTCACAAGTTCCCCAGAGCTCTGGTCTTGGTGCATTCACTTCTGGATCCTCAAGTGTGTCTGGAAATGCAAACCTGGG AATCTCACAACCAATGAACAATCAGCAAGGGGCTGGCAGTATGGGCCAATCAGTATCAGGAATGAGCCAAGGAAATCTCGTACAAAATGGAATAGGTATA AACCAAAGCATGATGAATGGTCTCGGACCATCAAGTGTCTCTTCAGGAACTGGCACAATGATTCCTACTCCAGGAATGTCTCAACAAGTGCAAGCTGGGA TGCAGCCCCTTGGCTTGGCCAACAATGCAGCGGCTAATATGTCATTGTCGCAGCAGTCAACAAATTCTCTGCAGCCAGCTCAAACTAAATATGTGAAAGT TTGGGAGGGGAATTTGTCTGGGCAGCGGCAGAGGCAGCCTGTCTTCATCACGAAACTGGAGGGTTATAGGAGTGCATCAGCTTCTGAGACGCTTGCAGCA AATTGGCCAGCAACGATGCAAATTGTTCGGCTGATATCTCAGGACCACATGAATAACAAACAATATGTTGGGAAGGCTGATTTTCTAGTATTTCGAGCGG TGAATCAGCATGGATTTCTTGGGCAACTGCAAGAGAAGAAGCTTTGTGCGGTGATACAATTACCAACGCAGACATTGTTACTTTCTGTATCTGATAAAGC CTGCCGCTTGATTGGGATGCTTTTTCCTGGGCAACTCCAGCAGCAATTGCAACAACAGCAGCTTCCGCAATTGCAGCAACAGCAGCAGCAGCAACAACAG CAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGATGGTGGGGGGTGGTATGGGTCAAGGCTATGTTCAAGGTACAGCTGGCAGGTCCCAGT TAGTCTCTCAAGGCCAAATGAATTCACAAGGCACATCCAACTTACCCGGAAGTGGCTTCCTGAGTTGA
AA sequence Show only first row Show all	>Lus10041483 pacid=23146681 polypeptide=Lus10041483 locus=Lus10041483.g ID=Lus10041483.BGIv1.0 annot-version=v1.0 MAEKQLIVAVEGTAAMGPYWSTIVCDYLEKIIRNFCGSDLTGQKTTTSIAELSVVTFNSHGSYSACLVQRSGWTRDVDIFLQWLSCIPFIGGGFSDAAIA EGLSEALMMFQVSSNGSQSQQNLDCQRHCILVSASNPYPLPTPVYRPQIQNLDQSDNSDMQTESRLSDAEAVAKSFSQCSVSLSVICPKQLSKLRAIYNV GKRTNRGTDPPVDTAKNPHFLILISGSFAEACASLNGPGAANVPSTQSPVKMDVSSVNAVTGHPPAQIPSANGSLVNRASISAGGVPVATVKVEPSTVTS LAAGPGFQHLPSAARPAAQAPSLQTSSPMSTTQEMISNADTVQDSKPAVSGVPQSVRPVGTAAANVSILNNLSQARQVINSAALTGGTSMGLPSMNQTPV GMHMSNMISSGMASSVPAQTVFSSAQNPITSIAGSGTLPATSQVPQSSGLGAFTSGSSSVSGNANLGISQPMNNQQGAGSMGQSVSGMSQGNLVQNGIGI NQSMMNGLGPSSVSSGTGTMIPTPGMSQQVQAGMQPLGLANNAAANMSLSQQSTNSLQPAQTKYVKVWEGNLSGQRQRQPVFITKLEGYRSASASETLAA NWPATMQIVRLISQDHMNNKQYVGKADFLVFRAVNQHGFLGQLQEKKLCAVIQLPTQTLLLSVSDKACRLIGMLFPGQLQQQLQQQQLPQLQQQQQQQQQ QQQQQQQQQQQQQQMVGGGMGQGYVQGTAGRSQLVSQGQMNSQGTSNLPGSGFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10041483 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	4.9	0.9246
					Lus10016154 [exp]	5.1	0.8970
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	9.3	0.9087
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	9.4	0.9002
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	14.4	0.9096
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	15.0	0.9074
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	19.9	0.9000
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	21.2	0.8964
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	23.2	0.9085
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	23.9	0.9026

Compare expression of checked genes

Lus10041483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.