Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13310 135 / 8e-38 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034281 [exp] 439 / 8e-157 AT1G13310 259 / 8e-84 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128700 [exp] 241 / 5e-79 AT1G13310 299 / 2e-99 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10041484 pacid=23146832 polypeptide=Lus10041484 locus=Lus10041484.g ID=Lus10041484.BGIv1.0 annot-version=v1.0 ATGAAGAACTCAGCCTTCACCTTCAGACAAGCAGCTGGCGTTTTCCGGTATCTGGCTGATGTAGTTATTCCCTCTTTACAATCTGCAATTGTCAATAGTC CACCTGAAGCTAATTCATCCGTGTGCAATGCTATAAGCTTTGTTTGTCTTGCAGAAGCCCAGTCTATATACATCAGAAGGGCAGAAGAGACGGGTAGTAC AAGTTCTGGCGTTCTAGCAAAGCTTCACCAAGGTGCCTCAGAGTTTTTTGGTGAAGCCATGGCTGCATTACATGCTGGTATGGGAGACTGCAAGGGTATC TGTTCACGCTTTATGGAAGTCATATACTCAAGCAAAGCATTGCATGAGTTACAGAGTCACAAGTATCTCGCACAAGGTTTGAAGGACAATGAACAGGTAG GGGTTGCCATTGGTGTTCTTCGTAACTCATTAGCCGAAGCGAGAAAGAAAATGCCCGGGGATGTTGCTTGGAGAGCTGTCTTTAGCAAGGAAGTTGAGAT TGCGGATGATATGTTGCGAAAGTTTGAATATGAGAATGAATTTGTTTGGCATGAGAAGATACCTTGTGCGGGTGAGGAGTTGCCACTGCCAGAAGGTAGC AAACTCGTGAAGCCTCAACCTTATGAAGCCAAAACATTGCAAGTACAACTCGATTTCAAGATATAA
AA sequence Show only first row Show all	>Lus10041484 pacid=23146832 polypeptide=Lus10041484 locus=Lus10041484.g ID=Lus10041484.BGIv1.0 annot-version=v1.0 MKNSAFTFRQAAGVFRYLADVVIPSLQSAIVNSPPEANSSVCNAISFVCLAEAQSIYIRRAEETGSTSSGVLAKLHQGASEFFGEAMAALHAGMGDCKGI CSRFMEVIYSSKALHELQSHKYLAQGLKDNEQVGVAIGVLRNSLAEARKKMPGDVAWRAVFSKEVEIADDMLRKFEYENEFVWHEKIPCAGEELPLPEGS KLVKPQPYEAKTLQVQLDFKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13310			Endosomal targeting BRO1-like ...		Lus10041484 [exp]	0	1
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10026330 [exp]	1.0	0.8338
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	9.0	0.8088
AT1G68490			unknown protein		Lus10027557 [exp]	14.1	0.8008
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	15.3	0.6982
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	16.8	0.8207
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10023966 [exp]	17.1	0.7919
AT2G32760			unknown protein		Lus10022575 [exp]	18.7	0.7669
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10011796 [exp]	25.4	0.7868
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	31.6	0.7932
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	32.3	0.7379

Compare expression of checked genes

Lus10041484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.