Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 133 / 2e-34 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G27190 115 / 3e-28 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 108 / 9e-26 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 99 / 1e-22 Leucine-rich repeat protein kinase family protein (.1) AT5G62230 92 / 4e-20 ERL1 ERECTA-like 1 (.1.2) AT3G13380 90 / 3e-19 BRL3 BRI1-like 3 (.1) AT3G24240 90 / 3e-19 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G10620 89 / 3e-19 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G53890 89 / 4e-19 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G26330 89 / 5e-19 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034279 [exp] 324 / 1e-110 AT5G48380 213 / 1e-64 BAK1-interacting receptor-like kinase 1 (.1) Lus10034278 [exp] 134 / 3e-36 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 132 / 4e-34 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 130 / 3e-33 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10013288 [exp] 107 / 7e-27 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10030811 [exp] 105 / 2e-24 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 94 / 1e-20 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036608 [exp] 92 / 3e-20 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032945 [exp] 89 / 6e-20 AT1G17750 148 / 8e-40 PEP1 receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G003101 [exp] 153 / 1e-41 AT5G48380 239 / 4e-71 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G005001 [exp] 145 / 6e-41 AT5G48380 229 / 7e-71 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 144 / 3e-38 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004900 [exp] 141 / 3e-38 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 140 / 7e-38 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 140 / 8e-37 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 138 / 3e-36 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 133 / 4e-36 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 136 / 2e-35 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 136 / 2e-35 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041486 pacid=23147069 polypeptide=Lus10041486 locus=Lus10041486.g ID=Lus10041486.BGIv1.0 annot-version=v1.0 ATGGAGAGAGAGAAAGAGAGGTTGGGGGGTGGAATTTCGAAGTCGGGCCGTCGCGTACAGAGAGGAATCTTTTCCGTTTTCTCGTGCTGTACAATAAGAA GCCGAGACAAACAATCGAGGACAACCGAGCATGGAATCGGCGGGAAGTTCTCCGAATCGTCAAGCAAAATTATCAGTAAAAAACCTACCAAGTCATCAAA GAAAGCCGCACTCGTTACTGTACCACATGCGGGTTTGCCCGAGGCGACCGCCCAGCCGCATAAATTCTTACAGGGGAATCAGCTCTCCGGCTCGATTCCT TCTGACATCGCCGACAGACTCGGATTTTTAGCCGTTCTGGATCTTTCCAACAACCGTTTCAGCGGCGAGATTCCTTCCAATCTGTTCAATTGCTCTTACC TGAATGTGCTGAAGCTGGATAATAACCAGCTTTCGGGCCCGATTCCTGGTGGGCTGGCGCTGCTTGGCAGGCTGAGGAGGCTCGACGTCTCCAATAATCT GCTGTCTGGGCCGATTCATGATACGGATTCGAAATGCCTCGATTGGCCATTGCGGTTCAAGATTGCGACGGGTTTGGCAGGAGTATTGGCGTGGCTCCAT CACAACTGCAGTGTGAAGATATATCATCTGCACATAAACTCCAAGTGCATTTTGCTGGATCAGGGGTTCGTGCCAAAGTTGTCGAATTTCGAGAATGCCT TGTTTGTGAACCCGAACGATCATGACCGGTCGAGGAATCTGATATTGAATATGGATTTTCTGGAGCTGGGTTATGCCAAGAAGGATGTCCATAGCTTTGG AGTTGTGCTTTGGGAGCTAATTAATGGACGGAAGGAACCGATGATAATCAATGAGCCAGCATCGATTTCCGAGGGATGCACTTGTTCTTCTGGTGAAGGG TTCTATTTTGAGAAAATTGATAGGTGTGTTGTTGGGAAAGGGTACGATAGGGACATCTTTCAGTCGATGAAGGTTGCATTTGACTGTGTTGAGTCGTCAC CTGAAAGAAGGCCAACAATGCTCCAAGTTGTTCAAAGACTTGCACAAATTGGACAGGGAAGATATGGTTGA
AA sequence Show only first row Show all	>Lus10041486 pacid=23147069 polypeptide=Lus10041486 locus=Lus10041486.g ID=Lus10041486.BGIv1.0 annot-version=v1.0 MEREKERLGGGISKSGRRVQRGIFSVFSCCTIRSRDKQSRTTEHGIGGKFSESSSKIISKKPTKSSKKAALVTVPHAGLPEATAQPHKFLQGNQLSGSIP SDIADRLGFLAVLDLSNNRFSGEIPSNLFNCSYLNVLKLDNNQLSGPIPGGLALLGRLRRLDVSNNLLSGPIHDTDSKCLDWPLRFKIATGLAGVLAWLH HNCSVKIYHLHINSKCILLDQGFVPKLSNFENALFVNPNDHDRSRNLILNMDFLELGYAKKDVHSFGVVLWELINGRKEPMIINEPASISEGCTCSSGEG FYFEKIDRCVVGKGYDRDIFQSMKVAFDCVESSPERRPTMLQVVQRLAQIGQGRYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	0	1
					Lus10021851 [exp]	3.6	0.9596
AT4G30770			Putative membrane lipoprotein ...		Lus10037695 [exp]	4.8	0.8924
AT4G29530			Pyridoxal phosphate phosphatas...		Lus10008573 [exp]	4.9	0.8648
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	5.1	0.9596
					Lus10008791 [exp]	6.2	0.9596
					Lus10012440 [exp]	7.2	0.9596
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	8.1	0.9568
					Lus10026713 [exp]	8.8	0.9554
					Lus10020451 [exp]	9.5	0.9542
					Lus10031183 [exp]	10.2	0.9509

Compare expression of checked genes

Lus10041486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.