Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25570 850 / 0 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT1G28340 285 / 2e-87 AtRLP4 receptor like protein 4 (.1) AT2G28960 115 / 2e-26 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 114 / 6e-26 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 112 / 1e-25 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 111 / 4e-25 Leucine-rich repeat protein kinase family protein (.1) AT3G19230 106 / 4e-24 Leucine-rich repeat (LRR) family protein (.1) AT2G29000 106 / 1e-23 Leucine-rich repeat protein kinase family protein (.1) AT3G46340 105 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G07550 104 / 5e-23 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034275 [exp] 1101 / 0 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10015417 [exp] 286 / 7e-87 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 279 / 2e-85 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 274 / 2e-83 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10025849 [exp] 119 / 1e-27 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019907 [exp] 103 / 1e-22 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 97 / 1e-20 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002456 [exp] 96 / 1e-20 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10015057 [exp] 97 / 2e-20 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117000 [exp] 916 / 0 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.010G129300 [exp] 916 / 0 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.011G056800 [exp] 300 / 2e-93 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 291 / 5e-90 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.006G132100 [exp] 114 / 4e-26 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 107 / 3e-24 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G084900 [exp] 106 / 1e-23 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G090800 [exp] 104 / 2e-23 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G150200 [exp] 103 / 5e-23 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G052800 [exp] 100 / 1e-21 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10041488 pacid=23146721 polypeptide=Lus10041488 locus=Lus10041488.g ID=Lus10041488.BGIv1.0 annot-version=v1.0 ATGCATCATCGCCTTCTTCTCCTGTTCCTCCTCTTCTTCTTCTCTTCCTCCCAATCTGCTCTTTCATCTTCTTCTTTCCCTTTCGATATTTCCTACCGCA TTGACTCCGGCGGACCTACCAACGTCACCGACCTCTTCAACTCCAATTGGCTCTCTGACCGCTTCTTCACCGGCGGATCCTCCTCCGTCGTCTCCGAGCC CCTCCGCTTCCGCCACCCTCAGGAGAAGACCCTCCGCTACTTCCCTCTCTCCTCCGGCAAGAAGAACTGCTACATTCTCCCTCTCCCTTCCGGCCGCTAC TACTTCCGCACCTTCACCATCTACGACAACTATGACGGCAAGTCCCACTCCCCTAGCTTCGATGCCTCCGTAGAAGGCACTCTCGTCTTCTCCTGGCGCT CCCCCTGGCACGAATCCCTCGCCCGCGACGGCGCCTACTCCGATCTCTTCGCCTTCGTCAAAGACGGCGAGGCCGATTTATGCTTCTACAGTATAGCCAC CGATCCTCCCGTCATCGGCTCACTTGAAGTCCGCCAGATCGATCCGTTGTCTTACTCATCTTCCTCCCTCGGAGAAAATTTCATCTTGGTCAACTATGGC CGACTGTCCTGCGGCTCCGGTCAGTGGGGGCCTGGCTTCAGCAACGACACTGATTACTTCGGCAGAACCTGGCAGTCCGATGAAGAACTCCGAACCCCCA GCATGTCCAAAATCGTCCAAGCCATCTCCACCACCAAGTCTATTTCAGGGGTCAATCAGCCCCCAAATTACTTCCCGATGAAGCTTTATCAGTCGGCCGT TACCGGTAAGGGAGTACTGGAGTATGAGATTGAGGTTGACGCCAAGCTTGATTACTTGTTGTGGTTTCACTTCGCTGAGATTGAGTCCAGCGTCAGTAAG AAAGGACAGCGTGTGTTTGATGTCCTGGTCAATGAAAAGAATGCCAGTAGAGTTGACATATTTGCCCAAGTTGGTAACTTCGCTGCTTACAGTTTTAGCT ACACAGTGCATAACTTGAGCAGTACTACTTTGAGCGTGAAGCTAGTGCCGTTAGCTGGCTTTCCTTTGATCAGTGGGATTGAGAATTACGCTCTAGTTCC TAATGATATGGCAACTGTACCGGAGCAAGTGGTTGCTATGAAAGCGTTGAAAAACTCACTTCGTATTCCGGACAGAATGGGTTGGAATGGTGATCCCTGT GCTCCTACTAATTGGGATGCTTGGGAAGGGGTTACTTGCCATCCCAACAAAAACGAATCCGCCCTTGTTATATCGCAAATAGATCTTGGAAGTCAAGGCC TGAAAGGGTTTGTAAGTGATCAAATAAATCTGCTCACGAATCTGGTAAGCCTGAATTTGAGTGGCAATTCATTGGGAGGAACACTACCAGAGGGGCTTGG TCAAAAGTCTCTCATACGGCTGGATTTATCAGGCAATCAGTTTTCAGGTCCTATACCAGAAAGTTTAACTTCGTCAAGTCTACAATTAATGTTCTTGAAT GATAACTTATTAGAAGGCCGAGTCCCAGAAGAACTTTATTCCATTGGTATGCATGGTGGATCCATCAACCTTTCGGGTAACAAAGGTTTGTGCGGTGTAC CTTCATTACCTGACTGCTCCCTACTTTGGGATAATGGTCATTTATCCAAAGGTGGAATTATTGGTATAGCCATATCATCCGTGCTGGTATTTTTGGTGAC TCTGTTCGTGGTCTATGTCTGTTGCATCAGAAGGGGTAGTCATGACTACGATTTTGCTCCTTCTCATGATCTAACGTCAATAGCAGCAAAGAGGAACAGA TACCAGAGGCAGAAGTCACTGATGCTTCTGGAAATGGAGAGCCAACACGCAAAGGCTTTATCATCACCACAAGGTCTCAACAACTAA
AA sequence Show only first row Show all	>Lus10041488 pacid=23146721 polypeptide=Lus10041488 locus=Lus10041488.g ID=Lus10041488.BGIv1.0 annot-version=v1.0 MHHRLLLLFLLFFFSSSQSALSSSSFPFDISYRIDSGGPTNVTDLFNSNWLSDRFFTGGSSSVVSEPLRFRHPQEKTLRYFPLSSGKKNCYILPLPSGRY YFRTFTIYDNYDGKSHSPSFDASVEGTLVFSWRSPWHESLARDGAYSDLFAFVKDGEADLCFYSIATDPPVIGSLEVRQIDPLSYSSSSLGENFILVNYG RLSCGSGQWGPGFSNDTDYFGRTWQSDEELRTPSMSKIVQAISTTKSISGVNQPPNYFPMKLYQSAVTGKGVLEYEIEVDAKLDYLLWFHFAEIESSVSK KGQRVFDVLVNEKNASRVDIFAQVGNFAAYSFSYTVHNLSSTTLSVKLVPLAGFPLISGIENYALVPNDMATVPEQVVAMKALKNSLRIPDRMGWNGDPC APTNWDAWEGVTCHPNKNESALVISQIDLGSQGLKGFVSDQINLLTNLVSLNLSGNSLGGTLPEGLGQKSLIRLDLSGNQFSGPIPESLTSSSLQLMFLN DNLLEGRVPEELYSIGMHGGSINLSGNKGLCGVPSLPDCSLLWDNGHLSKGGIIGIAISSVLVFLVTLFVVYVCCIRRGSHDYDFAPSHDLTSIAAKRNR YQRQKSLMLLEMESQHAKALSSPQGLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25570			Di-glucose binding protein wit...		Lus10041488 [exp]	0	1
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	3.0	0.8395
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	3.3	0.8014
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	7.1	0.7923
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	7.5	0.8116
AT5G62140			unknown protein		Lus10038887 [exp]	10.8	0.8179
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	11.7	0.8211
AT5G52580			RabGAP/TBC domain-containing p...		Lus10039968 [exp]	17.0	0.7830
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	19.4	0.7844
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	20.9	0.7832
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	23.4	0.8059

Compare expression of checked genes

Lus10041488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.