Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13250 490 / 2e-175 GATL3 galacturonosyltransferase-like 3 (.1) AT3G06260 439 / 4e-155 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 425 / 2e-149 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 413 / 1e-144 GATL7 galacturonosyltransferase-like 7 (.1) AT1G70090 414 / 2e-144 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 413 / 4e-144 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G02720 409 / 4e-143 GATL5 galacturonosyltransferase 5 (.1.2) AT3G28340 407 / 4e-142 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G19300 400 / 1e-139 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 395 / 4e-138 GATL2 galacturonosyltransferase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034274 [exp] 659 / 0 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10012765 [exp] 446 / 1e-157 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 446 / 1e-157 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10010727 [exp] 414 / 4e-145 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10018801 [exp] 413 / 1e-144 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10002440 [exp] 413 / 1e-143 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10030821 [exp] 411 / 1e-143 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10032728 [exp] 410 / 1e-143 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10029215 [exp] 410 / 4e-143 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116900 [exp] 563 / 0 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 555 / 0 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 444 / 7e-157 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 422 / 3e-148 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 422 / 4e-148 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G242300 [exp] 417 / 3e-146 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.002G200200 [exp] 416 / 8e-146 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.005G128000 [exp] 416 / 8e-146 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.002G132900 [exp] 413 / 1e-144 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G125000 [exp] 412 / 4e-144 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10041489 pacid=23146624 polypeptide=Lus10041489 locus=Lus10041489.g ID=Lus10041489.BGIv1.0 annot-version=v1.0 ATGACATTTCGGCTCCTCTTACTCCTTCTTTTCATAATCGCCACCGCTGCAACATCAGTCGTCAATGCCGCCAAAGCCTTCCACCGCGAGCTTCCTGCGT TCAGAGAAGCGCCTGCGTTCCGGAACGGCAGGGGATGCCCCAGAATGGTGTGGTCCTCGTCAATCTCCGGCGGCCAGTTTCCCAACCGCCACGATCCATC GGTCATTCACATCGCCATGACACTCGACGCCACCTACCTCCGCGGCTCCGTCGCCGGTGTGTTTTCCGTCCTCCAGCACGCCTCCTGTCCGGAGAACATC GTCTTCCACTTCATCTCCACGCACCGCCGATCCGAGCTCTACCGTACAATCTCCAACACGTTCCCCTACCTGAGGTTCAACCTCTACCACTTCGACTCGA ATCTGGTGAAAGGCAAGATCTCGTCCTCCGTCCGCCGAGCTCTCGATCAGCCTCTAAACTACGCCAGGATTTACCTCGCGGATCTACTGCCGTCCACAGT GCGCAGGATAATCTACTTCGATTCCGATCTGGTGGTGGTTGATGACGTGGCGAAGCTTTGGGGGATCAATTTAGGTGCGCAAGTGCTGGGTGCGCCAGAG TACTGCTACGCAAACTTCACCACCTACTTCAACGACCGATTCTGGTCGAATCCAGAGTACGCGTCGTCGTTTAAAGGGCGGAGGCCGTGCTATTTCAACA CGGGAGTGATGGTGATCGATCTGTGGAAGTGGAGGGACGGAAAGTACACGGAGAAGCTGGAAGTGTGGATGAGAATCCAGAAGAAGGAGAGGATCTACGA GCTAGGTTCGCTTCCGCCGTTTCTGCTTGTGTTCGCTGGAAACGTGGAAGGGGTTGAGCACAGGTGGAACCAGCACGGGCTAGGCGGGGACAATCTGCAA GGTCTGTGTAGGGATCTGCACCCCGGTCCGGTGAGTCTTCTGCACTGGAGCGGGAAGGGGAAGCCGTGGCTGAGATTGGACGGGAAGAGGCCGTGTCCGT TGGATTCTCTGTGGGCGCCGTATGATCTCTATCATCAGTCCTTCTTCGCTGATAGCTAG
AA sequence Show only first row Show all	>Lus10041489 pacid=23146624 polypeptide=Lus10041489 locus=Lus10041489.g ID=Lus10041489.BGIv1.0 annot-version=v1.0 MTFRLLLLLLFIIATAATSVVNAAKAFHRELPAFREAPAFRNGRGCPRMVWSSSISGGQFPNRHDPSVIHIAMTLDATYLRGSVAGVFSVLQHASCPENI VFHFISTHRRSELYRTISNTFPYLRFNLYHFDSNLVKGKISSSVRRALDQPLNYARIYLADLLPSTVRRIIYFDSDLVVVDDVAKLWGINLGAQVLGAPE YCYANFTTYFNDRFWSNPEYASSFKGRRPCYFNTGVMVIDLWKWRDGKYTEKLEVWMRIQKKERIYELGSLPPFLLVFAGNVEGVEHRWNQHGLGGDNLQ GLCRDLHPGPVSLLHWSGKGKPWLRLDGKRPCPLDSLWAPYDLYHQSFFADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10041489 [exp]	0	1
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	1.0	0.9339
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	3.2	0.9090
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	4.6	0.9028
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	7.0	0.8034
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	8.9	0.8693
AT1G17620			Late embryogenesis abundant (L...		Lus10003824 [exp]	11.0	0.8480
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	11.2	0.8558
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	14.0	0.8577
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	14.8	0.8423
AT5G17350			unknown protein		Lus10034636 [exp]	17.5	0.8441

Compare expression of checked genes

Lus10041489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.