Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68830 724 / 0 STN7 STT7 homolog STN7 (.1) AT5G01920 182 / 4e-51 STN8 State transition 8, Protein kinase superfamily protein (.1) AT2G38620 44 / 0.0002 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034273 [exp] 793 / 0 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10014183 [exp] 182 / 6e-51 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 139 / 1e-35 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10040593 [exp] 43 / 0.0004 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 43 / 0.0005 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116800 [exp] 739 / 0 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.010G129466 [exp] 189 / 1e-57 AT1G68830 207 / 9e-65 STT7 homolog STN7 (.1) Potri.016G138500 [exp] 193 / 6e-55 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.006G109700 [exp] 187 / 5e-53 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.010G129532 [exp] 173 / 5e-51 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.002G003400 [exp] 48 / 1e-05 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 48 / 1e-05 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041490 pacid=23146597 polypeptide=Lus10041490 locus=Lus10041490.g ID=Lus10041490.BGIv1.0 annot-version=v1.0 ATGGCTACCATGGCTTCCGGCGGAGTAACCGCCGGAGTTGTACCGTCTAAACTCCATCCCTGCAAACCCAATAAGCTCCTCCATTCTCCGTTTCTGGGCC AAAATCAGCTCAACCTCACCAAACACAATTCTAGAAGAGCAAAGCTCAGAGTTTCTGCATCACTGGAAGCAAGTCACGAATTGGTCAATCTGGTTCACAA TTTCTTCGTTGGTGTTGGGGTTGGGCTGCCCTGCACAGTGATGGAGTGTGGTGATATCATTTACAGAAGCACTCTGCCGAAATCCAATGCTCTGACCCTC ACAGTTCCAGGAGTTGCTCTGGCTCTCAGCGTCGTGTCTTACCTTTGGGCCACCCCTGGAGTAGCTCCGGGTTTCTTCGATATGTTTGTCCTTGCTTTCG TCGAACGATTGTTTCGAACCAGTTACAGAAAGGACAATATTGTTTTGGGGAAGAAGTTGGGTGAAGGAGCTTTTGGAGTCGTCTATAAAGTTTCGGTGGA TAAGCCTGCTTCCAAGAAGAAGGGAGGTGAACTTGTGTTGAAAAAGGCTACTGAATATGGAGCTGTGGAAATTTGGATGAATGAACGTGTTCGAAGAGCT TGTGCTAGCAGTTGTGCTGAGTATTTGTATGGATTTCTTGAGAACTCTTCAAAGAAAGGAAGTGAGTATTGGCTTCTATGGAAGTTTGAAGGGGAGGCCA CTCTCTATGATTTAATGCAGAGCAGAGAGTTCCCTTACAACGTTGAGACATTGATTCTAGGCAAGGTTCAGGATTTACCGAAAGGGCTGGAAAGGGAAAG TAGAATTATCCAAACTATAATGAGTCAGCTCTTATTTTCCCTAGATGGGCAGCAGATTTGCGAGTGGGAATTAACTATATTCCGAATGAGTTCCTTTTGG ATCCCAGAACAATACATCATGAGCACGCAGACTCCATCTGCACCATCTGCTCCCGTAGCTACTGCACTTTCCCCAGTGTTATGGCAGCTAAATTTGCCTG ACAGATTCGACATTTACAGCGCCGGTTTAATCTTTCTACAAATGGCCTTTCCTGGACTAAAAACAGACAGCAATCTCATACAGTTCAACCGTCAACTGAA AAGATGCGACTATGACTTGGTTGCATGGAGGAAGAGTGCCGAGCCCCGGGCCTCACAAGAACTAAGGAAGGGCTTTGAGCTACTCGATTTAGACGGCGGG ATCGGATGGCAACTTCTCACCTCAATGGTACGATACAAAGCACGACAAAGAATAAGCGCCAAGGGAGCTTTAGCCCATCCTTACTTCGACAAAGAAGGGC TGTTAGCTTTGTCAGTTATGCAGAACTTAAGGATGCAACTCATTCGAGCTACACAACAGGATTATGGCGAAGCTGCCAACTGGATCATTCAGCTAATGGC AAAATCAGGAACAGAAAAAGAAGGTGGCTTCACTGAAGCCCAGCTTCTGGAACTCAGAGAAAGGCAAGAGCCTGTGAAGAAACCAGTTGCGCAAAGGAAT GCTCTAGCGTCAGCTCTTAGGCTGCAGAGGAAGCTTGTGAAGACATTGAATCAAAGCATGGACGATCTGAACCAACGCAGAAAGAGTATATGGTGGAGCA GGTGGATCCCAAGAGAGGAATGA
AA sequence Show only first row Show all	>Lus10041490 pacid=23146597 polypeptide=Lus10041490 locus=Lus10041490.g ID=Lus10041490.BGIv1.0 annot-version=v1.0 MATMASGGVTAGVVPSKLHPCKPNKLLHSPFLGQNQLNLTKHNSRRAKLRVSASLEASHELVNLVHNFFVGVGVGLPCTVMECGDIIYRSTLPKSNALTL TVPGVALALSVVSYLWATPGVAPGFFDMFVLAFVERLFRTSYRKDNIVLGKKLGEGAFGVVYKVSVDKPASKKKGGELVLKKATEYGAVEIWMNERVRRA CASSCAEYLYGFLENSSKKGSEYWLLWKFEGEATLYDLMQSREFPYNVETLILGKVQDLPKGLERESRIIQTIMSQLLFSLDGQQICEWELTIFRMSSFW IPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLKTDSNLIQFNRQLKRCDYDLVAWRKSAEPRASQELRKGFELLDLDGG IGWQLLTSMVRYKARQRISAKGALAHPYFDKEGLLALSVMQNLRMQLIRATQQDYGEAANWIIQLMAKSGTEKEGGFTEAQLLELRERQEPVKKPVAQRN ALASALRLQRKLVKTLNQSMDDLNQRRKSIWWSRWIPREE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10041490 [exp]	0	1
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	2.2	0.8772
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	6.0	0.8684
AT5G59400			unknown protein		Lus10040799 [exp]	9.5	0.8554
AT3G56010			unknown protein		Lus10040939 [exp]	15.0	0.8413
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	17.1	0.8748
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	21.6	0.8687
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030210 [exp]	22.3	0.8313
AT5G59400			unknown protein		Lus10016531 [exp]	23.0	0.8347
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	24.0	0.8336
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	25.5	0.8359

Compare expression of checked genes

Lus10041490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.