Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13245 59 / 5e-14 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1) AT1G67265 53 / 1e-11 DVL3, RTFL21 DEVIL 3, ROTUNDIFOLIA like 21 (.1) AT1G68825 52 / 3e-11 DVL5, RTFL15 DEVIL 5, ROTUNDIFOLIA like 15 (.1.2) AT3G25717 51 / 8e-11 RTFL16, DVL6 DEVIL 6, ROTUNDIFOLIA like 16 (.1) AT3G02493 46 / 8e-09 DVL2, RTFL19, DVL12 DEVIL 2, ROTUNDIFOLIA like 19 (.1) AT3G55515 46 / 1e-08 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT5G16023 45 / 2e-08 RTFL18, DVL1 DEVIL 1, ROTUNDIFOLIA like 18 (.1) AT4G13395 44 / 5e-08 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT2G36985 43 / 1e-07 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) AT1G64585 43 / 1e-07 RTFL22, DVL12 DEVIL 12, ROTUNDIFOLIA like 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034272 [exp] 69 / 7e-18 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10028393 [exp] 44 / 8e-08 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10041846 [exp] 44 / 1e-07 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10002705 [exp] 44 / 2e-07 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10023399 [exp] 43 / 6e-07 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10026526 [exp] 40 / 2e-06 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Lus10041259 [exp] 40 / 2e-06 AT1G53708 70 / 2e-17 ROTUNDIFOLIA like 9 (.1) Lus10021966 [exp] 40 / 2e-06 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10040784 [exp] 41 / 3e-06 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129600 [exp] 60 / 2e-14 AT1G13245 75 / 1e-20 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.008G116700 [exp] 60 / 3e-14 AT1G13245 76 / 6e-21 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.017G112100 [exp] 55 / 2e-12 AT1G67265 62 / 1e-15 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.004G102950 [exp] 52 / 4e-11 AT1G67265 64 / 4e-16 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.008G035900 [exp] 46 / 1e-08 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.014G138900 [exp] 45 / 1e-08 AT3G63088 56 / 7e-13 DEVIL 14, ROTUNDIFOLIA like 14 (.1) Potri.010G226250 [exp] 44 / 4e-08 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.001G161200 [exp] 44 / 7e-08 AT1G53708 76 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.003G073900 [exp] 44 / 8e-08 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1) Potri.010G201700 [exp] 44 / 1e-07 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10041491 pacid=23146979 polypeptide=Lus10041491 locus=Lus10041491.g ID=Lus10041491.BGIv1.0 annot-version=v1.0 ATGAAGATGATGCAGGGCAGTGGTACTGCAGGAGGGTCAAAGAGAAGAGTATCTTCTTCATCTTCTTCTTCATCATCAACAACAAGCAAGCTTGGAGCTG CCCTCCGAGAGCAAAGGGCTAGGCTTTACATCATCAGGAGATGTGTTGTTATGCTCCTCTGCTGGCATGATTAG
AA sequence Show only first row Show all	>Lus10041491 pacid=23146979 polypeptide=Lus10041491 locus=Lus10041491.g ID=Lus10041491.BGIv1.0 annot-version=v1.0 MKMMQGSGTAGGSKRRVSSSSSSSSSTTSKLGAALREQRARLYIIRRCVVMLLCWHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	1.7	0.9398
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	2.4	0.9259
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	3.0	0.9248
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	4.9	0.9232
					Lus10011059 [exp]	7.0	0.9159
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	9.4	0.9240
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028584 [exp]	9.5	0.9239
AT4G09890			Protein of unknown function (D...		Lus10020842 [exp]	14.7	0.9040
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	15.0	0.8871
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	16.5	0.9034

Compare expression of checked genes

Lus10041491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.