Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25580 478 / 8e-168 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G01600 227 / 1e-70 NAC ANAC044 NAC domain containing protein 44 (.1) AT4G29230 225 / 2e-68 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G14490 214 / 4e-66 NAC ANAC085 NAC domain containing protein 85 (.1) AT1G28470 209 / 1e-64 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G28500 208 / 3e-64 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT5G56620 209 / 2e-63 NAC ANAC099 NAC domain containing protein 99 (.1) AT3G18400 68 / 1e-12 NAC ANAC058 NAC domain containing protein 58 (.1) AT1G01720 67 / 4e-12 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G02220 67 / 7e-12 NAC ANAC003 NAC domain containing protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021708 [exp] 575 / 0 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 266 / 6e-85 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10034999 [exp] 222 / 4e-67 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10039873 [exp] 216 / 5e-67 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10013967 [exp] 216 / 1e-66 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10018637 [exp] 212 / 2e-65 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10012927 [exp] 215 / 3e-65 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10015392 [exp] 198 / 1e-60 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10025690 [exp] 67 / 5e-12 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116600 [exp] 557 / 0 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G129700 [exp] 540 / 0 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 271 / 1e-87 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.006G152700 [exp] 223 / 3e-68 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.018G068700 [exp] 223 / 5e-68 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.011G058400 [exp] 216 / 3e-66 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.017G016700 [exp] 212 / 7e-66 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 212 / 1e-65 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 196 / 1e-59 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.002G005800 [exp] 73 / 9e-14 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10041492 pacid=23146870 polypeptide=Lus10041492 locus=Lus10041492.g ID=Lus10041492.BGIv1.0 annot-version=v1.0 ATGCATGATGACTCACGTCACGACAGCTCCTCTTCCCAGCCTCTTGAATTGACAGTAATATCAAATGCATCGTGGCTGGTGGATGGTAACAGAATAGCAA CTAAAATCAAGAGTGCATCTGATCCTGAAAGGGTGAAATGGGAGAGCAATCCAACTAAAGCTTGTCCAAATTGCCAGCACATTATCGACAACAGTGATGC TGTCCAAGCATGGCCGGGGTTGCCCAGGGGGGTAAAGTTTGATCCAACTAACCCGGAAATTATTTGGCATTTACTTGCGAAAAATGGATTTGGCGGTCAA AAACCCCACCCGTTCATTGAAGAGTTTGTACCAACTGTTGATAATGGTGATGGAATCTGTTATACTCATCCCAAGAATCTTCCTGGTGTTAAACAAGATG GAAATTCTTGCCACTTCTTTCATAGGGCAATCAAAGCTTACAATACAGGAACTCGAAAGCGCCGGAAGATTCAAGGTGATGATTCTGGCGATGTCCGTTG GCACAAAACTGGAAGGACTAAGCCAGTGGTCTTGGATGGTGTGCAGAGAGGTTGCAAAAAAATAATGGTGCTTTATATGGGTAAATCAGAGAAAACTAGC TGGGTAATGCATCAGTATCACCTTGGAACGAGTGAAGACGAGAAAGATGGGGAATTTGTAGTTTCAAAGATATTCTACCAGCAGCAACAACAACAAGCTA ATAAGGGGGATAAAGTTGGAGAAGAGTTACCTGAAAACATCGATCCTATTAGCCCCATGTCTGTCACACCTGACCCTCCTCGCATTGAAAGGCATTCCTC TGATTTTGACCTGGAGATAGACTCTAACAATGTTATTATAGCAGCTGATCCTCCTGTCCAGAATACCGAGCTTGAATGTCCAGAAGATGCGATTCAGCCG GTTTGTGAGAACAACCAAGAGTGTGTTGCAGAAGATACAAAATGGTGGGATAGCGAGTCCCAAAACTTGTTGGATTCGCAACAAATGGTTGAAGGATTAT CATTGTGTGAAGAGTTCCTTCGGAGTCAGTCTCCTAGTAGAGATGGGAATGGAGATCCAATCCCAGATGAGAAATCTGATCTTTCTTCCCAGTATGCAAA GCTAGGTGCAGCAGATTTGAAGAAAGATCTGGAGGAATGCCAAACTCTGGTCCTTGACCCTGCTAATATAGAACTCGATACACCTCCAGAGTTCAGACTT AGCCAGATTGACTTTGGATCGCAGGACAGCTTTCTTGCATGGGGAGGAGGTAAACTCGAATGA
AA sequence Show only first row Show all	>Lus10041492 pacid=23146870 polypeptide=Lus10041492 locus=Lus10041492.g ID=Lus10041492.BGIv1.0 annot-version=v1.0 MHDDSRHDSSSSQPLELTVISNASWLVDGNRIATKIKSASDPERVKWESNPTKACPNCQHIIDNSDAVQAWPGLPRGVKFDPTNPEIIWHLLAKNGFGGQ KPHPFIEEFVPTVDNGDGICYTHPKNLPGVKQDGNSCHFFHRAIKAYNTGTRKRRKIQGDDSGDVRWHKTGRTKPVVLDGVQRGCKKIMVLYMGKSEKTS WVMHQYHLGTSEDEKDGEFVVSKIFYQQQQQQANKGDKVGEELPENIDPISPMSVTPDPPRIERHSSDFDLEIDSNNVIIAADPPVQNTELECPEDAIQP VCENNQECVAEDTKWWDSESQNLLDSQQMVEGLSLCEEFLRSQSPSRDGNGDPIPDEKSDLSSQYAKLGAADLKKDLEECQTLVLDPANIELDTPPEFRL SQIDFGSQDSFLAWGGGKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	0	1
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	8.1	0.7037
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	12.0	0.6684
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	14.6	0.6980
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	18.0	0.6799
AT3G12390			Nascent polypeptide-associated...		Lus10026133 [exp]	25.2	0.6931
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	28.1	0.6478
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	29.9	0.6955
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	31.4	0.6267
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	35.7	0.6599
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	42.3	0.6894

Compare expression of checked genes

Lus10041492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.