Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 189 / 4e-57 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 183 / 3e-55 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G41130 127 / 9e-35 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 126 / 1e-34 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G40200 111 / 8e-29 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 88 / 7e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 63 / 4e-11 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G00050 61 / 4e-10 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 59 / 1e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G17880 59 / 2e-09 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034271 [exp] 412 / 2e-145 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 212 / 7e-66 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 208 / 3e-64 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 137 / 3e-38 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 134 / 2e-37 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 114 / 6e-30 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 109 / 9e-28 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 106 / 3e-27 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 105 / 1e-26 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116000 [exp] 204 / 3e-63 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 204 / 4e-63 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 156 / 6e-46 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 145 / 7e-42 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 122 / 9e-33 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 114 / 3e-30 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G070800 [exp] 115 / 4e-30 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 114 / 7e-30 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 108 / 2e-27 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 107 / 4e-27 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041493 pacid=23146792 polypeptide=Lus10041493 locus=Lus10041493.g ID=Lus10041493.BGIv1.0 annot-version=v1.0 ATGGAGTACTACGACAACTGCACCGCCTTATACGGCGGAAGCGGCGGCGGAGGAGCTGCAGATTTCATACTCCCGCACCCACCACCATCGTCTTCATGGG CTTCTACTCTCCCTCATCATCATCATCCGGGTATGTTAGGTCATCAAAATTCCCTCCACTTTCCATACCAAGCTGCTGGAACATGGGATGATGATGATCG GCCTGCAGCAGATCACCACCTCAGGATAATATCCGATTCCCCACTTGGCAGATTCCCTAATTACATGAACAACATATTGAGGACGTCCACTACTGGAGAT GATATTCTCGATGCAAAGGCACTCGCTGCCTCCAAGAACCACAGCGAGGCTGAGCGTCGCCGACGACACAGGATCAATACCCACCTCTCCAATCTCCGCT CTTTGCTCCCCAACACTACCAAAACGGACAAGGCGTCGCTGCTGGCGGAAGTGATCCAACACGTCAAAGACCTCAAAAGACAAACCTCTCATCTCATAGC CGATGACGAAACCCTGCTTATCATCCCTACAGAGGACGATGATCTGACGGTGGAGGCTGACTCAGTCGACGAGGAGGGTAATTTTGTCATTAAGGCCACA CTGTGCTGCCAAGACAGGCATGACCTCCTCCCTGACCTCATCGCCACCCTCAACTCCTTGCGCCTCCGTACCCTCAAGGCTGAGATCACCACCTTAGCTG GCAGGGTCAAGCACGTCCTTTTCTTCACCTCCGCCGACCGCGACTACTACTCCTCGTCGAGTAATAATAACTCCGATGACGATGACAACCAGGATAATAG AGATGATCAGTGCTACTACCAACAGCCGCGGATTCAACAACAATATTCCTTAAGCTCTATCCACGAGGCGTTGAAGTCTGTCATGGTTAAGGGCGGCGGC GGAAACGGCAACTCGTCTTCCGGTGGGAGTGTGAAACGGCAGCGTACTAATAGGAATAACAACATCTAA
AA sequence Show only first row Show all	>Lus10041493 pacid=23146792 polypeptide=Lus10041493 locus=Lus10041493.g ID=Lus10041493.BGIv1.0 annot-version=v1.0 MEYYDNCTALYGGSGGGGAADFILPHPPPSSSWASTLPHHHHPGMLGHQNSLHFPYQAAGTWDDDDRPAADHHLRIISDSPLGRFPNYMNNILRTSTTGD DILDAKALAASKNHSEAERRRRHRINTHLSNLRSLLPNTTKTDKASLLAEVIQHVKDLKRQTSHLIADDETLLIIPTEDDDLTVEADSVDEEGNFVIKAT LCCQDRHDLLPDLIATLNSLRLRTLKAEITTLAGRVKHVLFFTSADRDYYSSSSNNNSDDDDNQDNRDDQCYYQQPRIQQQYSLSSIHEALKSVMVKGGG GNGNSSSGGSVKRQRTNRNNNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	0	1
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	1.0	0.7741
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	6.5	0.6959
					Lus10004190 [exp]	11.0	0.5273
					Lus10004020 [exp]	25.7	0.6357
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	43.8	0.6349
AT5G17850			Sodium/calcium exchanger famil...		Lus10001329 [exp]	58.5	0.5521
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	73.6	0.5662
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	85.6	0.5633
AT3G26750			unknown protein		Lus10021459 [exp]	92.5	0.5755
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	123.4	0.5347

Compare expression of checked genes

Lus10041493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.