Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25700 499 / 1e-175 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 186 / 1e-53 Eukaryotic aspartyl protease family protein (.1) AT2G42980 186 / 6e-53 Eukaryotic aspartyl protease family protein (.1) AT1G01300 184 / 1e-52 Eukaryotic aspartyl protease family protein (.1) AT3G61820 182 / 5e-52 Eukaryotic aspartyl protease family protein (.1) AT3G59080 177 / 8e-50 Eukaryotic aspartyl protease family protein (.1.2) AT3G12700 172 / 2e-48 Eukaryotic aspartyl protease family protein (.1.2) AT3G20015 151 / 1e-40 Eukaryotic aspartyl protease family protein (.1) AT5G33340 150 / 2e-40 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT5G10770 147 / 6e-39 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034270 [exp] 349 / 3e-120 AT3G25700 237 / 5e-77 Eukaryotic aspartyl protease family protein (.1.2) Lus10003999 [exp] 209 / 7e-62 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 186 / 8e-53 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 168 / 6e-47 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 168 / 1e-45 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10034269 [exp] 149 / 2e-42 ND 149 / 5e-44 Lus10023445 [exp] 152 / 8e-41 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 151 / 8e-41 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 150 / 3e-40 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115900 [exp] 510 / 8e-180 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G204600 [exp] 191 / 9e-55 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 186 / 5e-54 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 185 / 5e-53 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 180 / 3e-51 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 173 / 2e-48 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 170 / 8e-48 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 167 / 2e-46 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 156 / 2e-42 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 153 / 2e-41 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041494 pacid=23146797 polypeptide=Lus10041494 locus=Lus10041494.g ID=Lus10041494.BGIv1.0 annot-version=v1.0 ATGGTAATGCTATCTCTCCTCCCCTTCTCTTCCTTCTTCTTCTTCTTTCTCTTCCTTCTCTTTTTCATCCTCCATCCAACCGCCGCCGACCAACAACACT CCCTCAAGCTCCCATTGCTCCACAAGCCTCCATTCTCCTCCCCACTCCAGGCCCTCTCCTTCGACTCCCGCCGCCTCTCCCACCTCCACCGTCATCGCAC TTCCTTCACTTCCCCTCTCGTCTCCGGCGCCTCCTCCGGCTCCGGCCAGTACTTCGTCTCCCTCCGACTCGGCTCCCCGCCGCAGCCCCTCCTCCTCGTC GCCGACACCGGCAGCGACCTAATCTGGGTCAAATGCTCCGCCTGCCGCAACTGCTCCCACCATTCCCCCGGATCTACATTCCTACCTCGACATTCCTCCA CTTTCTCCCTCGCTCACTGCTTCAATCGCCTCTGCCGATTCGTTCCTCACCCGTACCCTAATCCCTGTAACCTCACGCGCCTCCACAGCCCCTGCCGGTA CGAGTACCAGTACTCGGACGGGTCGGAAACGAGCGGGTTCTTTTCTACTGAAACGACGACGCTTAATACCAGCTCAGGACGCGAAACGAAGCTGAAGAAT GTTTCGTTCGGGTGCGGGTTCCGTGTTTCGGGTCCCAGCGTAACGGGTCAGAGTTTCAACGGCGCCCAGGGAGTAATGGGCCTTGGTAGAGGCTCGATCT CGTTCTCTTCTCAGTTGGGCCGTCATTTCGGCAACAAGTTCTCCTACTGTCTCCGTGACTTCACCCTCGCTCCACCTCCGACCAGCTACCTCATGATCGG CGGCGGCGAAGGCGGAGGAGGAGGATCTGAATCGGATGCCGAATCAATGGACTTCACTCCGTTAATCGTCAACCCACTTTCCCCAACTTTTTACTACATC GGGATCTGGAGCGTCTCCGTTAGCGGTGTTAAATTACCGATCGACCCTTCCGTTTGGTCGATGGACGAGTTGGGTAACGGTGGCATGGTGGTCGATTCGG GGACTACACTTACATTTTTACCTGAAGCGGCGTACGGGGTGATTCTAACGGCGTTTAGACGGCGGATTACGCTACCGAGTGCGGAGGATCCGACTCCTGG GTTCGATCTGTGCGTGAACGTGTCAGGGGAGTCGAGAAGGCCGAGCTTCCCGGCGATGAGGTTTGAACTTGGAGGTGGATCGGTGTACTCGCCGCCGGCG GGGAACTATTTCATAGGGACGAGTGAGGGAGTGATGTGCTTAGCAATTCAAGGAGTGAAAACCGGGGAAGGTTTTGGGGTGATAGGGAATCTGATGCAAC AAGGATATTTGTTGGAGTTCGATAGAGACAGATCCCGGCTCGGTTTTTCGCGCCGTGGATGTTCTCTTCCTTGA
AA sequence Show only first row Show all	>Lus10041494 pacid=23146797 polypeptide=Lus10041494 locus=Lus10041494.g ID=Lus10041494.BGIv1.0 annot-version=v1.0 MVMLSLLPFSSFFFFFLFLLFFILHPTAADQQHSLKLPLLHKPPFSSPLQALSFDSRRLSHLHRHRTSFTSPLVSGASSGSGQYFVSLRLGSPPQPLLLV ADTGSDLIWVKCSACRNCSHHSPGSTFLPRHSSTFSLAHCFNRLCRFVPHPYPNPCNLTRLHSPCRYEYQYSDGSETSGFFSTETTTLNTSSGRETKLKN VSFGCGFRVSGPSVTGQSFNGAQGVMGLGRGSISFSSQLGRHFGNKFSYCLRDFTLAPPPTSYLMIGGGEGGGGGSESDAESMDFTPLIVNPLSPTFYYI GIWSVSVSGVKLPIDPSVWSMDELGNGGMVVDSGTTLTFLPEAAYGVILTAFRRRITLPSAEDPTPGFDLCVNVSGESRRPSFPAMRFELGGGSVYSPPA GNYFIGTSEGVMCLAIQGVKTGEGFGVIGNLMQQGYLLEFDRDRSRLGFSRRGCSLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	1.4	0.8973
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	1.7	0.8689
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	2.2	0.8545
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	2.8	0.8423
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	4.7	0.8755
AT3G07210			unknown protein		Lus10038194 [exp]	4.9	0.8551
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	6.0	0.8380
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	7.3	0.8532
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	8.4	0.8449
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	8.4	0.8320

Compare expression of checked genes

Lus10041494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.