Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73965 55 / 1e-10 CLE13 CLAVATA3/ESR-RELATED 13 (.1) AT1G68795 55 / 2e-10 CLE12 CLAVATA3/ESR-RELATED 12 (.1) AT1G26600 48 / 7e-08 CLE9 CLAVATA3/ESR-RELATED 9 (.1) AT1G69320 47 / 1e-07 CLE10 CLAVATA3/ESR-RELATED 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034267 [exp] 167 / 4e-54 AT1G68795 59 / 7e-12 CLAVATA3/ESR-RELATED 12 (.1) Lus10037107 [exp] 49 / 3e-08 AT1G73965 51 / 3e-09 CLAVATA3/ESR-RELATED 13 (.1) Lus10036960 [exp] 49 / 5e-08 AT1G69320 52 / 1e-09 CLAVATA3/ESR-RELATED 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130400 [exp] 75 / 3e-18 AT1G68795 65 / 1e-14 CLAVATA3/ESR-RELATED 12 (.1) Potri.008G115600 [exp] 57 / 2e-11 AT1G73965 67 / 1e-15 CLAVATA3/ESR-RELATED 13 (.1) Potri.012G059600 [exp] 50 / 9e-09 AT1G68795 59 / 3e-12 CLAVATA3/ESR-RELATED 12 (.1) Potri.008G093500 [exp] 50 / 1e-08 AT1G69320 62 / 1e-13 CLAVATA3/ESR-RELATED 10 (.1) Potri.010G160600 [exp] 47 / 5e-07 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041496 pacid=23146941 polypeptide=Lus10041496 locus=Lus10041496.g ID=Lus10041496.BGIv1.0 annot-version=v1.0 ATGGCCTTGAAAGTACAAGCTCTAGTCTTCCTCATTGTCCTCCTCTGGATCTCCTTCCTCTTCATCATCTTCCATGAGCTGTACGGCTTCAAGACCAACG TTCACCACAACACACACTTGATCGTCTCATCTTCCATGCGAAGGCAATACGATCGTGATGATCATCAGCAGCAGCATCAAGATCGCCCCGAACCTAACAA TTACAGGAAAGTGTTGGCTACCAAATTCGACTTCAGTCGGTTCTTGAAGCCAAGCCCTCCTCGTGGTGGCCATCATCACCATCACCATCATCGCGATCGT CACAAGGGTTTAGCTGATCATGAAGATCAACAAGGTCACGAGATCGATCCTCGATATGGAGTCGAGAAGAGGCTAGTTCCAAGCGGTCCGAACCCATTGC ACCATTGA
AA sequence Show only first row Show all	>Lus10041496 pacid=23146941 polypeptide=Lus10041496 locus=Lus10041496.g ID=Lus10041496.BGIv1.0 annot-version=v1.0 MALKVQALVFLIVLLWISFLFIIFHELYGFKTNVHHNTHLIVSSSMRRQYDRDDHQQQHQDRPEPNNYRKVLATKFDFSRFLKPSPPRGGHHHHHHHRDR HKGLADHEDQQGHEIDPRYGVEKRLVPSGPNPLHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	0	1
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	3.5	0.9558
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	4.9	0.9600
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	5.9	0.9647
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	7.1	0.9604
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	7.5	0.9579
AT2G37610			unknown protein		Lus10016559 [exp]	7.7	0.9549
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	10.4	0.9610
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	11.2	0.9344
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	11.2	0.9593
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	12.0	0.9555

Compare expression of checked genes

Lus10041496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.