Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 464 / 1e-165 Mitochondrial substrate carrier family protein (.1) AT1G72820 250 / 5e-81 Mitochondrial substrate carrier family protein (.1) AT5G26200 249 / 2e-80 Mitochondrial substrate carrier family protein (.1) AT1G07030 107 / 1e-26 Mitochondrial substrate carrier family protein (.1) AT2G30160 101 / 3e-24 Mitochondrial substrate carrier family protein (.1) AT1G34065 84 / 4e-18 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 82 / 7e-17 Mitochondrial substrate carrier family protein (.1) AT4G39460 79 / 2e-16 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G42130 76 / 5e-15 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT2G47490 74 / 1e-14 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012597 [exp] 600 / 0 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 511 / 0 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 416 / 4e-147 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 225 / 5e-71 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 219 / 8e-69 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 215 / 7e-67 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 104 / 3e-25 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 103 / 5e-25 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 79 / 3e-16 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117000 [exp] 492 / 3e-176 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 487 / 1e-174 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 297 / 2e-99 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 239 / 2e-76 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 235 / 5e-75 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 119 / 7e-31 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 107 / 2e-26 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 103 / 5e-25 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 82 / 3e-17 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 81 / 2e-16 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10041498 pacid=23146771 polypeptide=Lus10041498 locus=Lus10041498.g ID=Lus10041498.BGIv1.0 annot-version=v1.0 ATGGAGTCCGCAGCTACTAACGTCCGACCACAGTCCTTTGGGCAGACCGAGATTAACTGGGACAAGCTCGACAAGACTAAGTTTTATGTTGTAGGAGCTG GCATTTTCACTGGCGTTACAGTAGCCCTGTATCCTATGTCCGTAATCAAAACCAGACTCCAGGTTGCTACCAAGGATACCATTGAGAAAAATGCTTTGTC TGTTATCAAAGGCTTGCTGAAGACGGATGGTGTTCCTGGTCTATACCGAGGGTTTGGCACTGTGGTAACTGGGGCAATTCCCACCAGGATTGTCTTTCTC ACAGCTTTAGAGACCACAAAAGTGGCTTCTTTCAAAATGGTTGAACCATTCAAGTTGTCTGAAGCTTCGCAAGCTGCTGTAGCCAATGGGATTGCTGGCA TGACAGCATCTTTGTTATCACAGACTATGTTTGTTCCTATCGATGTGGTCAGTCAAAAGTTGATGGTGCAAGGATACTCTGGTCATCGGAGATATAAAGG CGGTATTGATGTAGTTCGTAAAGTTATTCAGAGTGATGGAATCCGAGGATTATATAAAGGATTTGGCCTTTCAGTAATGACTTATGCTCCATCTAGTGCT GTGTGGTGGGCTAGCTATGGATCAAGCCAACGCATCATATGGAGGTATCTAGGACATGGGGCTGATTCGGCGCCTGATGCCCCTAGTGAGACGAAGATAG TCCTAGTTCAAGCTGCTGGAGGGATTATTGCAGGAGCAACTGCTTCCTGCATCACAACCCCATTGGACACTATAAAGACGCGTTTGCAGGTGATGGGGCA TGAAAGGGAAAGCTCAGCGAGACAGGTTGTTAAAAACTTGTTAAGGGATGATGGCTGGGCTGGTTTATACAAGGGATTAGGTCCACGATTTTTCAGCATG TCAGCATGGGGAACTTCTATGATATTATCATATGAATATTTGAGTATGTACTTTTCTTCACTTATTTGCTCTTTCGCCATAGGGTATTGCATTATGATTT TCTACTCAGAAAATCATTCCTTTTGTGAATCGTGA
AA sequence Show only first row Show all	>Lus10041498 pacid=23146771 polypeptide=Lus10041498 locus=Lus10041498.g ID=Lus10041498.BGIv1.0 annot-version=v1.0 MESAATNVRPQSFGQTEINWDKLDKTKFYVVGAGIFTGVTVALYPMSVIKTRLQVATKDTIEKNALSVIKGLLKTDGVPGLYRGFGTVVTGAIPTRIVFL TALETTKVASFKMVEPFKLSEASQAAVANGIAGMTASLLSQTMFVPIDVVSQKLMVQGYSGHRRYKGGIDVVRKVIQSDGIRGLYKGFGLSVMTYAPSSA VWWASYGSSQRIIWRYLGHGADSAPDAPSETKIVLVQAAGGIIAGATASCITTPLDTIKTRLQVMGHERESSARQVVKNLLRDDGWAGLYKGLGPRFFSM SAWGTSMILSYEYLSMYFSSLICSFAIGYCIMIFYSENHSFCES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	0	1
AT1G53645			hydroxyproline-rich glycoprote...		Lus10005585 [exp]	9.4	0.8131
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	10.5	0.8279
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	12.0	0.8335
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	15.2	0.8154
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	15.5	0.8215
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	16.7	0.7890
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	20.7	0.8302
AT5G36930			Disease resistance protein (TI...		Lus10034697 [exp]	23.1	0.7834
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10020035 [exp]	24.7	0.8233
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	24.9	0.7959

Compare expression of checked genes

Lus10041498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.