Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36880 1238 / 0 ACS acetyl-CoA synthetase (.1.2) AT5G23050 156 / 2e-39 AAE17 acyl-activating enzyme 17 (.1) AT5G38120 144 / 3e-36 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 139 / 1e-34 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 139 / 2e-34 AMP-dependent synthetase and ligase family protein (.1) AT1G55320 136 / 7e-33 AAE18 acyl-activating enzyme 18 (.1.2) AT1G20480 130 / 1e-31 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 129 / 5e-31 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT3G48990 125 / 3e-30 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 112 / 8e-26 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012595 [exp] 1451 / 0 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10038966 [exp] 164 / 4e-42 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10027257 [exp] 160 / 2e-40 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10013831 [exp] 151 / 1e-38 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 149 / 1e-37 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 145 / 3e-36 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026544 [exp] 140 / 8e-35 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 135 / 4e-33 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 134 / 6e-33 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140900 [exp] 1273 / 0 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.015G056000 [exp] 149 / 3e-37 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.017G112800 [exp] 140 / 1e-34 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 139 / 2e-34 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 135 / 3e-33 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 135 / 3e-33 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 129 / 3e-31 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G006600 [exp] 125 / 2e-29 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.015G144700 [exp] 123 / 2e-29 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G006700 [exp] 124 / 5e-29 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10041499 pacid=23146859 polypeptide=Lus10041499 locus=Lus10041499.g ID=Lus10041499.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCGTCATCGTCGTCGTATAGAGCGGGAGGAGGAATTGGAATTGGATCCACAACCCATCATCTTCTCCATCTTCATGCAGCTTCTTCTCCTT ACTTTTCTCTCCTCTTTCCCCCTTTGACTTCCCGCAGAAAGTCCAAATTCAAATCACCTTCTTATTCTTCATCACTGCGATCAGTCAAACCCGCAACATC CCCCCTCCTCTTTCCTCCTACTCCTTCTCATCCGATGTCCTCCTTCAAAACCACCACCAATCATCTCCGCCACGTCGAGTCCATGAACCTTCTTCCTTCC GGCGCTGGTAAGATTCCTCGTCTCAACGCCGTCATTTTAGGCGAATCTCTTGCTTCCGAGGAGGATGATCTCGTCTTCCCTAGCGATCACTTCTCCCGTC ACGCCCTCGTTTCTTCCCCGCACAAGTACTTGGAAATGTATAAAAGGTCCGTGGAAGATCCTGCTGGATTTTGGTCCGACATTGCTTCTCAATTCTTCTG GAAAACCAAGTGGGGAGATACTGTCTGCTCTGAGAACTTCGACGTCCGCGCTGGCAATGTCTTTATCCAGTGGTTTAAAGGTGGGATCACCAACATTTGC TACAACTGCGTAGATAGAAATGTAGAGTCTGGCAACGGTGATAAGATTGCTATGTACTGGGAAGGCAACGAGCGGGGTACTCAGGACTCTCTTACCTACT CCCAGCTTCTTCACAAAGTTTGCCAGCTAGCCAACTACTTGAGAGATATAGGAGTCAAAAAGGGTGATGCAGTGGTCATTTATCTACCCATGCTTATGGA ACTTCCCATTGCTATGCTCGCATGCGCTCGCATTGGTGCAGTTCACTCGGTTGTCTTTGCTGGGTTCTCTTCAGATTCTCTTGCTCAAAGAATCATGGAT AGCAGACCAAAAGCTGTTATTACCTGCAATGCAGTCAAGAGAGGTTCCAAGGTTATCCAACTCAAAGACATAGTTGATGCAGCCCTTACTGACTCTGCTA AAAATGGCTTCTCAGTTGATGCTTGCTTAACTTATGAAAACGAGTCTGCAATGAAGAGGGAAAACACGAAATGGAAGGAGGGAAGAGACATATGGTGGCA AGATGTTGTTCCAAAATACTCAACAAGTTGTGAGGTGGAATGGGTTGATGCAGAGGATCCCCTTTTCCTGTTGTACACTAGTGGGAGCACCGGAAAACCC AAGGGTGTTCTACATACAACTGGAGGATATATGGTTTACACTGCTACGACCTTCAAGTATGCTTTTGATTATAAACCTTCCGACATCTACTGGTGCACTG CTGATTGTGGATGGATCACCGGCCACAGCTATGTGACTTATGGACCTTTGCTTAATGGAGCTAGCGTTGTAATTTATGAAGGGGCACCAAATTATCCTGA TGCTGGTCGCTGTTGGGATATAGTCGACAAATTTAAAGTGACAATATTCTACACTGCCCCAACATTGGTGCGGTCCCTTATGCGTGATGGTGATGATTAT GTCACTCGCTATTCCCGCAAGTCCTTACGAGTCCTTGGAAGTGTAGGCGAGCCTATTAATCCGAGTGCATGGAGGTGGTTCTTCAATGTAATAGGAGATT CGAGGTGCCCGATATCTGACACTTGGTGGCAGACTGAAACTGGAGGCTTCATGATCACCCCTTTACCGGGTGCCTGGCCGCAAAAGCCTGGTTCTGCTAC TTTCCCTTTCTTTGGTGTTCAGCCTGTAATAGTGGATGAAAAGGGTGTTGAGATAGAAGGAGAGTGCAGTGGGTATCTTTGCGTGAAAAGCTCATGGCCT GGGGCATTTCGAACTCTTTATGGAGACCATGAGAGATATGAAACCACGTACTTTAAGCCATTCCCTGGTTATTATTTTAGTGGTGATGGCTGCAGCAGGG ACAAGGATGGGTACTACTGGCTTACTGGAAGAGTTGATGATGTCATCAATGTCAGTGGACACCGTATAGGGACAGCGGAAGTGGAATCTGCTCTCGTTTC TCACCCTCAATGTGCAGAAGCTGCTGTGGTTGGCATTGAGCATGAGGTTAAGGGGCAGGGGATATATGCATTTGTCACCCTTGTAGATGGTGTTCCATAC AGTGAAGGGCTCCGAAAAGACCTAATAACTGCCGTACGGAAACAGATAGGACCGTTTGCAGCACCTGACAGGATACACTGGGCACCTGGCCTACCGAAGA CGAGAAGTGGTAAGATAATGAGAAGGGTTCTCAGAAAGATTGCGTCCAGGCAATTGGATGAGCTTGGAGACACGAGCACGCTGGCAGATCCCGGTGTAGT CGACCAGCTTATAGCTCTTGCTGATAGCTGA
AA sequence Show only first row Show all	>Lus10041499 pacid=23146859 polypeptide=Lus10041499 locus=Lus10041499.g ID=Lus10041499.BGIv1.0 annot-version=v1.0 MSSPSSSSYRAGGGIGIGSTTHHLLHLHAASSPYFSLLFPPLTSRRKSKFKSPSYSSSLRSVKPATSPLLFPPTPSHPMSSFKTTTNHLRHVESMNLLPS GAGKIPRLNAVILGESLASEEDDLVFPSDHFSRHALVSSPHKYLEMYKRSVEDPAGFWSDIASQFFWKTKWGDTVCSENFDVRAGNVFIQWFKGGITNIC YNCVDRNVESGNGDKIAMYWEGNERGTQDSLTYSQLLHKVCQLANYLRDIGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD SRPKAVITCNAVKRGSKVIQLKDIVDAALTDSAKNGFSVDACLTYENESAMKRENTKWKEGRDIWWQDVVPKYSTSCEVEWVDAEDPLFLLYTSGSTGKP KGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWITGHSYVTYGPLLNGASVVIYEGAPNYPDAGRCWDIVDKFKVTIFYTAPTLVRSLMRDGDDY VTRYSRKSLRVLGSVGEPINPSAWRWFFNVIGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCVKSSWP GAFRTLYGDHERYETTYFKPFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVDGVPY SEGLRKDLITAVRKQIGPFAAPDRIHWAPGLPKTRSGKIMRRVLRKIASRQLDELGDTSTLADPGVVDQLIALADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	1.4	0.9619
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	2.8	0.9584
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	6.2	0.9401
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041464 [exp]	6.5	0.9271
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	8.0	0.9313
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	9.4	0.9362
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	9.5	0.9392
AT4G39900			unknown protein		Lus10024045 [exp]	10.1	0.9388
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	10.8	0.9397
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	12.5	0.9341

Compare expression of checked genes

Lus10041499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.