Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12910 642 / 0 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 603 / 0 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G24520 439 / 3e-155 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G29260 65 / 2e-11 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35050 64 / 5e-11 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 60 / 9e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G18830 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 56 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 56 / 2e-08 Transducin family protein / WD-40 repeat family protein (.1) AT1G53090 54 / 1e-07 SPA4 SPA1-related 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012593 [exp] 495 / 9e-179 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023228 [exp] 383 / 5e-133 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10007274 [exp] 68 / 1e-12 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 69 / 2e-12 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10027848 [exp] 58 / 4e-09 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 57 / 1e-08 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10039578 [exp] 50 / 2e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 50 / 2e-06 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016373 [exp] 50 / 3e-06 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140700 [exp] 659 / 0 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G220500 [exp] 657 / 0 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G002600 [exp] 427 / 1e-150 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.012G006100 [exp] 423 / 7e-149 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.006G209000 [exp] 403 / 6e-141 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G075800 [exp] 374 / 1e-129 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 65 / 5e-12 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 64 / 2e-11 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G074400 [exp] 60 / 1e-09 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 59 / 2e-09 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10041500 pacid=23146610 polypeptide=Lus10041500 locus=Lus10041500.g ID=Lus10041500.BGIv1.0 annot-version=v1.0 ATGGGGGCGACCAGCGACCCTAATCAGAACCAAGACGGCGGCTCCGACGAGCAGAAGCGTTCCGAGATCTACACCTACGAGGCCCCATGGCACATCTACG CCATGAACTGGAGCGTCCGCCGCGACAAGAAGTACCGACTCGCCATATCCAGCCTCCTCGAGCAGTACCACAACCGAGTCGAGATCGTCCAGCTCGACGA TTCCAACGGCGAGATCCGCTCCGACCTTAACCTCTCCTTCGAGCATCCTTTCCCTCCTACCAAGACCATGTTCATTCCGGACAAGGACTCCCAGAAGCCT GACCTCCTCGCCACTTCCAGCGACTTCCTCCGCCTCTGGCTCATCTCCGAAGATCGCGTCGAGCTCAAGAGCCTCCTCAACGGCAACAAGAACAGCGAGT TCTGCGGCCCGCTCACCTCCTTTGACTGGAACGACGCCGATCCTAAGCGAATCGGCACCTCTAGCATCGACACCACCTGTACGATTTGGGACATCGAGCG GGAGGCCGTCGATACGCAGCTAATTGCTCACGATAAGGAGGTCTACGACATCGCTTGGGGCGGAGTTGGAGTTTTCGCCTCTGTATCGGCTGATGGCTCG GTTAGGGTTTTTGATTTGAGGGATAAGGAGCATTCGACTATCATCTACGAGAGCTCTGAGCCTGATACTCCTTTGGTCCGCCTTGGATGGAACAAGCAGG ACCCTAGGTATATGGCGACTATCATAATGGACAGTGCCAAAGTTGTTGTCCTTGATATCCGCTTCCCTACACTCCCTGTGGTTGAGTTGCAGAGGCACCA TGCCAGCGTTAACTCCATTGCTTGGGCGCCTCATAGCTCTTGCCACATTTGCACTGCTGGAGACGATTCTCAGGCCTTGATATGGGATCTCTCCTCCATG GGACAGCCTGTTGACGGAGGGCTTGATCCAATTCTTGCTTACACTGCTGGTGCTGAAATTGAGCAACTTCAGTGGTCAGCTTCCCAGCCTGATTGGGTTG CTATTGCCTTCTCTACAAAGCTCCAGATTCTCAGGGTCTGA
AA sequence Show only first row Show all	>Lus10041500 pacid=23146610 polypeptide=Lus10041500 locus=Lus10041500.g ID=Lus10041500.BGIv1.0 annot-version=v1.0 MGATSDPNQNQDGGSDEQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAISSLLEQYHNRVEIVQLDDSNGEIRSDLNLSFEHPFPPTKTMFIPDKDSQKP DLLATSSDFLRLWLISEDRVELKSLLNGNKNSEFCGPLTSFDWNDADPKRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGVGVFASVSADGS VRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHHASVNSIAWAPHSSCHICTAGDDSQALIWDLSSM GQPVDGGLDPILAYTAGAEIEQLQWSASQPDWVAIAFSTKLQILRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	0	1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	4.8	0.8409
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	4.9	0.8284
AT1G13930			unknown protein		Lus10036965 [exp]	4.9	0.8040
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10011009 [exp]	5.5	0.7703
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	5.7	0.8245
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	5.7	0.8323
AT4G16400			unknown protein		Lus10016614 [exp]	5.9	0.8115
AT2G27180			unknown protein		Lus10008446 [exp]	8.1	0.8097
AT3G09030			BTB/POZ domain-containing prot...		Lus10004834 [exp]	12.4	0.7874
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	12.4	0.7787

Compare expression of checked genes

Lus10041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.