Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54900 159 / 5e-49 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT2G38270 103 / 1e-26 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT4G04950 101 / 9e-25 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT3G15660 95 / 3e-24 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012592 [exp] 369 / 2e-131 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10002847 [exp] 103 / 4e-26 AT2G38270 384 / 4e-135 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Lus10018487 [exp] 98 / 5e-25 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011187 [exp] 94 / 2e-23 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10008687 [exp] 96 / 9e-23 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10011188 [exp] 62 / 1e-11 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10026132 [exp] 41 / 0.0007 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141200 [exp] 181 / 6e-58 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.004G042200 [exp] 105 / 6e-26 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.003G060600 [exp] 99 / 8e-26 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.016G119200 [exp] 101 / 2e-25 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.011G051400 [exp] 100 / 3e-24 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10041501 pacid=23146611 polypeptide=Lus10041501 locus=Lus10041501.g ID=Lus10041501.BGIv1.0 annot-version=v1.0 ATGACAAAATTGCCCCCATCGGAACGAAGAACCGTTGGATTGAAGTTAGAAGATGAACGGGCAGAATATGTTTGCCGCCGGCCAGGACCTGCTTCCTTGA AAGGAATCCACGAGCTCACTAACTCTTCAGAACATCCAACACCTTTCATTCTACTTTTGACAGCTGATAAACTAAAAAGTACCAACAATACTATGGCTTC CCAAATTGTTTTCTCATCTCCGTCGACGGCGGCGATTGTTCGACCATCGTTGACTCCCTCATCGTCCTTCTCCCCAGCTCAAGCTTCCATTCCCTCTGCA TCTAAATTTTCCTCTCAATTCCCGCGAATCGTACGAACCAATTCGCTATTTGTTCATAAGCGTTTACCGGGAGCCAAGAAGACCAACCTCCCTGCCGTCA GATGTGCGTTGTCGTCGGAGCTGAAAACCACGATAGATAAAGTAGTTACATCGCAGAAAGTCCTTCTCTTTATGAAGGGAACCAAAGATTTCCCTCAGTG TGGATTCTCAAACACTGTGGTGCAAATACTGAATGCTTGCAACGTCCCTTTTGAAACCATCAACATACTTGAGAATGAACTTCTTCGTCAAGGGTTGAAG GAGTACTCCAGTTGGCCAACTTTCCCTCAGCTCTATATCGACGGTGAATTTTTTGGTGGCTGTGATATTACTGTTGGTAAGTCAACTTCATTCACAACTT AG
AA sequence Show only first row Show all	>Lus10041501 pacid=23146611 polypeptide=Lus10041501 locus=Lus10041501.g ID=Lus10041501.BGIv1.0 annot-version=v1.0 MTKLPPSERRTVGLKLEDERAEYVCRRPGPASLKGIHELTNSSEHPTPFILLLTADKLKSTNNTMASQIVFSSPSTAAIVRPSLTPSSSFSPAQASIPSA SKFSSQFPRIVRTNSLFVHKRLPGAKKTNLPAVRCALSSELKTTIDKVVTSQKVLLFMKGTKDFPQCGFSNTVVQILNACNVPFETINILENELLRQGLK EYSSWPTFPQLYIDGEFFGGCDITVGKSTSFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10041501 [exp]	0	1
					Lus10032429 [exp]	3.2	0.7727
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039593 [exp]	3.6	0.7672
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	3.7	0.8184
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10017940 [exp]	6.9	0.7698
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	7.5	0.7950
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	8.0	0.8014
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	10.4	0.7987
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	15.3	0.7586
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	15.9	0.7893
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	19.7	0.7635

Compare expression of checked genes

Lus10041501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.