Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12930 536 / 2e-175 ARM repeat superfamily protein (.1) AT5G62600 124 / 7e-29 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012590 [exp] 951 / 0 AT1G12930 1148 / 0.0 ARM repeat superfamily protein (.1) Lus10004250 [exp] 121 / 8e-28 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10042159 [exp] 94 / 4e-19 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141100 [exp] 713 / 0 AT1G12930 1258 / 0.0 ARM repeat superfamily protein (.1) Potri.012G073600 [exp] 129 / 4e-30 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 127 / 1e-29 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10041503 pacid=23146844 polypeptide=Lus10041503 locus=Lus10041503.g ID=Lus10041503.BGIv1.0 annot-version=v1.0 ATGGAGCTCCAAATCAAAGTAGCCCAGGCTGTTCAAGTCCTCAATCACGACGCCCAGTCCTGTAACCGCGTCGCCGCTAATCAGTGGCTTGTTCAATTTC AGCAGACCGACTCTGCTTGGGAGGTTGCCACTTCCATCCTCACCTCCGATCATCTCCCTTCTCTCCTCTCCAATTCTGAACTCCACTTCTTTGCCGCCCA GATTCTCAAACGCAAGATCCGAAGTGAAGGACGTTACCTGCAGTCTGGACCAAAACATTCTTTGCTGAATGCTTTGCTTTTCGCTGCTAAGAGATTTAGC TCTGGTCCTCCCCAGCTTTTGACACAAATATGTCTTGCGCTTGCTTCCCTTATGCTTACTGCTGTGGACGATCAAAAACCTATCGAGCAGCTATTTTACA GTCTACAGACGCTGCAGAACAATGATGATGGTAATGTTGCGCTCTTGGAGATGCTCACTGTTCTTCCAGAAGAAGTTGTTGACGCCCAAAATTCTGATAG TAGTGTAAGCTCCTTTCGTAGAAGGCAATGTGGCCAAGAGCTTCTTTCACATACTCCTATGGTGCTGGAGTTTTTGCTGGAGCAATCTCAGAAGAAGTAT GATGCTGTTGTTCAACTGCATGAGAGGGATAGGAAAGTTCTTCGTTGCCTACTTAGTTGGGTGCGAGCTGGAGGCTTCTCAGATATTTCTCGGGACTCAT TGGCGACACATCCACTTCTTAATTTTGTATTTAACTCTTTGCAGGTTTCATCTTCATTTGATTTAGCCATTGAAGTTTTGATAGAACTTGCTAGTCGATA TGAGGGACTGCAACAGATTCTGCTGTACAGGATACAGTTTCTCAAGGAGGTGCTTCTTCTTTCTGCTATTAATAACAGGGATGAGAAAGTCATCAGTGGC CTTGCATGCCTAATGTCAGAAATTGGACAGGCGGCACCATCTCTCATTGTTGAGGCAAGTACCGAGGCTCTAGCATTGACAGATACAATGTTGAGCTGTC TGGCATATCCAAGTGAAGACTGGGAGATCGCAGACTCAACATTGCAATTCTGGTCTAGCCTTGTGAGCTATATACTTGGCCTCGAGTCCAATGGTACTAT AGACAAGAAGCATGTTGAAGCTATTTTCTCTTCCATCTTCTTGGCATTGGTTGATGCTCTTATATTGCGAGCCCAGGTTGATGAATCCACATTTAATGAG CGGACTGGTGTTCTTGAACTACCTGATGGTCTCATCAATTTCAGGATGAATCTTGTTGAACTACTGGTGGACATATGCCAGCTCTTAAGACCTACCAGGT TTTTGCAGAAGGTCCTTTTTGGTGGCTGGGCGCCGGTAAACACACCAGTACCTTGGAAAGAGGTGGAAACTAAACTTTTTGTTCTTAATGTGGTTTCTGA AGTAGTCTTGCAGGAGAGCCAGATGTTTGACATCTCTTGCATCATGCAATTAGTCACGATGTTATCGACTTGGCCTCCGGATGAGCTCAGTGGGTTCATG AACGTGGCATTGGAGAAGAGACATTTACCTTTAGATGAAGAAGAAGAAGTAATAAGTGCAATCAGCACAATCCTTAGTTCTATACCAAATGAAGAACTAA AGTGCACCTTGTCGGCTAGATTGCTTTCATCGAGCTATGATGCCTTAGGAAAGCTTATTAATGAAGACGGAGATCATTCTCACAGACAAAATCCAGCTAC TTATATTCAACTTTTGAACAACGCAGCCAGAGGATTACATAGAATAGGAACTGTATTTGCTCAACTTGCAATGTCGAAATCGAATGAGCAAGCTACAGAT GACCCTTTCTTGGGTTTGTTGAGGGTGTTTTGGCCTCTGTTAGAGAAACTTCTCAGATCGGAATACATGGAAAACAGCAACTTGTCTTCTGCAGCTTGTC GGGCGCTCTCTCTGGCAATTCAGTCTTCTGGGCAGCACTTTCTAGTTTTACTTCCGAGCGTGCTAGATTGCATGTCAACAAATTTTCTCTCGTTCCAAAA TCATGAATGTTACATTAAAACGGCTTCCATTGTTGTCGAAGAATTCAACCATGTGGAGGAATATGGTCCTCTGTTTGTCAAAACATTTGAAAGATTTACC CAAGCAGCATCAGTTATGGGTCTGAATTCTTCATATATATGTGACCAAGAGCCTGATTTGGTGGAAGCTTATGCAAATTTTGCATCCACATTTGTCCGAA GCTGTACTAAGCAAGTTTTAGCTCAATCTGGCCCAATCCTGGAAATTTCGTTCCAAAAGGCCGCTATATGTTGCACAGCCATGCACCGGGGAGCAGCTTT AGCTGCGATCTCATATTTATCATGTTTATTGGACGTGAGCCTTGCCTTTCTGCTAGAACCAATTAACTCAATTCCTGAGGAATCATTTAATTGCATCACA ATTCAGCTCATCTCACGTAGTGGTGAAGGGCTAGTATCAAATATCGTATATGCTTTGCTTGGTGTTTCAGCAATGTCTCGGGTTCACAAGTGTGCAACAG TGTTGCAACAGTTGGCTGCAATTTGCAGGTTCTGTGATGGAACAATTTGGAATTCGATGCTCCGTTGGGACTCATTGCAAGGATGGCTACAAGCTGCAGT GCAAGCTCTTCCAGTGGAATATCTAAAGGCAGGAGAAGATGCTACATTGGTTCCAGTTTGGGTGGAGGCCCTCTCTGGGGCTGCAACCGGATATCTGGAG AGCAAGAGCATCTGCAATGGTGGTAATAACAGTTATGCACATATGCAAGGGAAAGGGGGAAGAGTCCTCAAGCGTGTTATTCGAGAATTTGCGGACAGTC ATCGATGTTCCCTGCCCCAAATCTGA
AA sequence Show only first row Show all	>Lus10041503 pacid=23146844 polypeptide=Lus10041503 locus=Lus10041503.g ID=Lus10041503.BGIv1.0 annot-version=v1.0 MELQIKVAQAVQVLNHDAQSCNRVAANQWLVQFQQTDSAWEVATSILTSDHLPSLLSNSELHFFAAQILKRKIRSEGRYLQSGPKHSLLNALLFAAKRFS SGPPQLLTQICLALASLMLTAVDDQKPIEQLFYSLQTLQNNDDGNVALLEMLTVLPEEVVDAQNSDSSVSSFRRRQCGQELLSHTPMVLEFLLEQSQKKY DAVVQLHERDRKVLRCLLSWVRAGGFSDISRDSLATHPLLNFVFNSLQVSSSFDLAIEVLIELASRYEGLQQILLYRIQFLKEVLLLSAINNRDEKVISG LACLMSEIGQAAPSLIVEASTEALALTDTMLSCLAYPSEDWEIADSTLQFWSSLVSYILGLESNGTIDKKHVEAIFSSIFLALVDALILRAQVDESTFNE RTGVLELPDGLINFRMNLVELLVDICQLLRPTRFLQKVLFGGWAPVNTPVPWKEVETKLFVLNVVSEVVLQESQMFDISCIMQLVTMLSTWPPDELSGFM NVALEKRHLPLDEEEEVISAISTILSSIPNEELKCTLSARLLSSSYDALGKLINEDGDHSHRQNPATYIQLLNNAARGLHRIGTVFAQLAMSKSNEQATD DPFLGLLRVFWPLLEKLLRSEYMENSNLSSAACRALSLAIQSSGQHFLVLLPSVLDCMSTNFLSFQNHECYIKTASIVVEEFNHVEEYGPLFVKTFERFT QAASVMGLNSSYICDQEPDLVEAYANFASTFVRSCTKQVLAQSGPILEISFQKAAICCTAMHRGAALAAISYLSCLLDVSLAFLLEPINSIPEESFNCIT IQLISRSGEGLVSNIVYALLGVSAMSRVHKCATVLQQLAAICRFCDGTIWNSMLRWDSLQGWLQAAVQALPVEYLKAGEDATLVPVWVEALSGAATGYLE SKSICNGGNNSYAHMQGKGGRVLKRVIREFADSHRCSLPQI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	4.7	0.8823
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	8.0	0.8689
AT1G27170			transmembrane receptors;ATP bi...		Lus10004911 [exp]	11.3	0.8074
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	12.2	0.8209
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	13.4	0.8492
AT5G36930			Disease resistance protein (TI...		Lus10001040 [exp]	16.1	0.7848
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	16.7	0.8346
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	18.7	0.8090
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	19.4	0.8079
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	20.7	0.8348

Compare expression of checked genes

Lus10041503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.