Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13890 185 / 1e-56 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) AT1G55240 47 / 5e-06 Family of unknown function (DUF716) (.1) AT1G49470 41 / 0.0006 Family of unknown function (DUF716) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012588 [exp] 329 / 4e-113 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10011779 [exp] 60 / 4e-10 AT1G32120 69 / 9e-13 unknown protein Lus10002465 [exp] 47 / 6e-06 ND 58 / 4e-10 Lus10023842 [exp] 42 / 0.0003 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237200 [exp] 224 / 5e-72 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 64 / 1e-11 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.010G067000 [exp] 62 / 9e-11 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.009G108900 [exp] 47 / 8e-06 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10041505 pacid=23146754 polypeptide=Lus10041505 locus=Lus10041505.g ID=Lus10041505.BGIv1.0 annot-version=v1.0 ATGGCGGGTCTATTCTACCAGATACTCTCGTCCTCGGCCCTGATATCGCTGGGATTATACCATCTCATTTCCTCAGCTCGGTCCTACCTCAAATCCCCTC AGTCGTACGTTGCCAAACCCTTCCATCCCTTCCCCAATCCATCCTCCTCCTCTGGACTCAGACACCTCCCTCTCTACCTTCTCATCCTCTTCCTCCTCGT CGCCTTCGCTCACCAAACCCTAATCTCCTCCGATTCTGACCCTCTCCTCAAAGGCCACACTCCCGTCCACCGCTTCACCTCCCTCCAGTCCTCCGCCGTG GTCTTCCTCTTCCTCCTCCTCTCCCTCGCCCTCCTCGTCTCCGATTCCACCTCCTTCCTCCCTCTCCCACCTGATCTATTCTTCGCCCTAGCCTCCGCCA TCTTCTTCCTCAGCTACTACGTCTCCTCCTCTTCCGCCTCCGTCCAGACTTCCGATCTCCAGGCCAAGTGCGACTCCGTCTCCGCTCAAATCTCCGCCCT CGCATCCCTACTCTGCCTGATCGTAGCTTGCCAACCGAGGTTGTTCTTGGCAGATCTCGGACTTGGCGCTGCCGTGTGCCTGCAAGGACTGTGGGTGCTC CAGACGGGGCTCTCCCTCTATGTGGAGGCTTTCATTCCGGAAGGATGCCACAGGTTACTGGATGTGGTGAGTGGAGTGGAAGGCTCGACCAAGTGCGATA TCGAAGATTCGAGGTTGAGAGCTGTGGCGATATTGGATTTGGCATTCCTTCTTCATGTGATGTTCGCTGTGGTTACCCTGCTTGTTGTATACGCTGTGGT GGCTAGGTCAGTTGGGGTGAAGAGATCTGGATCATCGTCCTACGAGGCCTTGCCTACTACTGCTTCTGATGTCAATCATATTCAGTTGAAGGCTTTGACC GGCACTCAGGCATGA
AA sequence Show only first row Show all	>Lus10041505 pacid=23146754 polypeptide=Lus10041505 locus=Lus10041505.g ID=Lus10041505.BGIv1.0 annot-version=v1.0 MAGLFYQILSSSALISLGLYHLISSARSYLKSPQSYVAKPFHPFPNPSSSSGLRHLPLYLLILFLLVAFAHQTLISSDSDPLLKGHTPVHRFTSLQSSAV VFLFLLLSLALLVSDSTSFLPLPPDLFFALASAIFFLSYYVSSSSASVQTSDLQAKCDSVSAQISALASLLCLIVACQPRLFLADLGLGAAVCLQGLWVL QTGLSLYVEAFIPEGCHRLLDVVSGVEGSTKCDIEDSRLRAVAILDLAFLLHVMFAVVTLLVVYAVVARSVGVKRSGSSSYEALPTTASDVNHIQLKALT GTQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	0	1
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	1.7	0.8762
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	2.4	0.8992
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	4.2	0.8855
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	4.5	0.8719
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	6.2	0.8538
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	6.9	0.8426
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	11.2	0.8346
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	13.0	0.8548
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	14.3	0.8741
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	14.5	0.8477

Compare expression of checked genes

Lus10041505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.