Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02060 1166 / 0 DEAD/DEAH box helicase, putative (.1.2) AT2G01440 211 / 6e-57 DEAD/DEAH box RNA helicase family protein (.1) AT3G22330 58 / 2e-08 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G26742 57 / 5e-08 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22310 49 / 1e-05 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G71370 48 / 2e-05 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 48 / 3e-05 DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 47 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 47 / 8e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 46 / 9e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012587 [exp] 1521 / 0 AT3G02060 1231 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10034589 [exp] 207 / 8e-58 AT2G01440 769 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Lus10030075 [exp] 58 / 3e-08 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 57 / 6e-08 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001057 [exp] 56 / 2e-07 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 56 / 2e-07 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10035410 [exp] 55 / 2e-07 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 54 / 4e-07 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 51 / 4e-06 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145000 [exp] 1194 / 0 AT3G02060 1254 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.002G237400 [exp] 1177 / 0 AT3G02060 1270 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.010G112500 [exp] 206 / 5e-55 AT2G01440 1177 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G000500 [exp] 57 / 4e-08 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 57 / 6e-08 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 56 / 1e-07 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 51 / 3e-06 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.019G130900 [exp] 50 / 6e-06 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 49 / 2e-05 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 47 / 7e-05 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0123 [flax] [poplar] HTH PF02559 [flax] [poplar] CarD_CdnL_TRCF CarD-like/TRCF domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF03461 [flax] [poplar] TRCF TRCF domain
Representative CDS sequence Show only first row Show all	>Lus10041506 pacid=23146596 polypeptide=Lus10041506 locus=Lus10041506.g ID=Lus10041506.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTCGATGTTTGCTCCTCCTCCTCATCTTTCATCTCCACTCTCCACACACTACCAAATCAATTACGGACGGGGAATCTCTTCCACCTAAAAT GCCCTTCCTCTCACCGTTTCCTATCCTCATCTCCTTTCTCCGTCGTCCTCGCCTCTTCTCTCCACGTCCCCTCCGCCACCTCCGCCGCCGCTATCCCTTC TCCAGCTCGATACCGTCCCGGCGCCGACACCGTAGACGACGGCAATGACCCTATCTCCCTTCTCAATCTCAGAATCCACAGCACCCGCTCCACCAGAGAC GATTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAGGCCTGCGATGGACCCCCAGGAGGCCGACAAGTACATTCAGCTTGTGAAGGAGCAACAGCAGCGAG GTTTGCAGAAGTTGAAAGGAGATAGGCAGACCAACTCCGGCGGCGGCTTTAGCTACAAGGGCGATCCCTACACTCTTGGTGCTGGAGATTACGTCGTTCA CCGGAAGGCCGGCATCGGGAAGTTTGTTGCTATCAAGTTCGATCTACCTAACAATTCTTCTCGATCTGAACCTATTGAGTATGTCTTCCTCGAGTATGCT GACGGCATGGCCAAGCTCCCACTTCATCAGGCCTCTCGCTTGCTTTATCGTTACAATCTCCCCAACGAATCGAAAAAGCCTAAGACGCTTAGCAAATTGA GCGATCCCGGTGCATGGGAGAAGAGGAAGACCAAAGGTAAGGTTGCAATCCAGAGAATGGTTGTTGACTTAATGGAGCTGTATTTGCACCGATTGAAGCA AAGACGCCCTCCTTACCCGAAAAGTCCTGACATGGCTGGCTTTGATGCTCAATTTCCTTACAACCCCACTCCCGATCAGAAGCAGCATTTTCCATCCCCC CTTCACGGCTTAGATAACATGTTCCAGGCTTTCATTGACGTTGAAAGGGATCTGACCGAGAGGCAAACTCCAATGGACCGATTAATATGCGGGGACGTCG GTTTTGGTAAAACCGAAGTTGCTTTGCGTGCCATCTTTTGCGTGGTCTCAGCGGGAAAGCAAGCAATGATATTAGCACCAACAATTGTACTGGCCAAGCA ACATTTTGATGTTATTTCAGAACGTTTTTCCCGGTACCCCAATATCAAAGTAGGACTTCTCAGTCGGTTTCAGACCAGAACAGAAAAGATGACATACCTG GGCATGATCGAACGTGGTGAGTTGAACATAGTTATTGGAACTCACTCTCTTCTTGGAAGTCGAGTGGTCTATAACAATCTGGGGCTTCTTGTCGTCGACG AGGAACAGAGATTTGGTGTTAAACAGAAAGAGAAGATTGCTTCTCTCAAAACTTCTGTCGACGTTCTTACTCTCTCAGCAACTCCAATACCTCGAACGCT TTATTTAGCACTGACTGGCTTCCGTGATGCAAGTTTGATTTCCACTCCGCCACCTGAGAGGGTTCCTATAAGGACCCATTTATCACCCTATAACGAAGGA AAGGTAGCATTAGCAATACAAAATGAGCTGGATCGCGGTGGCCAGGTGTTTTATGTCTTGCCACGTATTAAAGGATTAGAAGAAGTTCATGATTTCCTCG ATCGATCATTTCCCGATGTTAAAATAGCCACTGCACATGGGAAGCTATACTCAAAGCAACTTGAGGAAACCATGGAGAAATTTGCATATGGTGAAATTAA GATTCTCATCTGTACAAATATTGTAGAAAGTGGCCTTGACATACCAAACGCAAATACCATCATAATCCAAGATGTTCAATTCTTTGGCCTATCACAATTG CATCAGTTGCGTGGAAGAGTGGGTCGGGCAGATAAGGAAGCTCATGCTTACCTATTTTATCCTGACAAGTCATCCCTAACTGAACAAGCACTGGAGAGGC TGCAAGCCATGGAAGAATGCGTAGATCTTGGACAAGGTTTCCAAATTGCTGAGAGAGACATGGGTATAAGAGGCTTTGGAACAATCTTCGGTGAGCAACA GACGGGAGATGTGGGGAACGTTGGCATTGATCTATTCTTTGAAATGCTTTTCGAGAGCTTGTCCAAGGTTGAAGAACACTGTGTGGTATCAGTTCCTTAC AAATCTGTTCAGGTTGATCTGAATGTAACACCTCGCCATACTTCTGAGTATATAAATTTCCTGGACAACCCGATTGAAATTATCGAAGAAGCTGAGAAAG CTGCAGAGAAAGACATATGGAGTCTGGTTCAGTTCACAGAAAATCTGCGGCGTCAATATGGAAAAGAACCCTACTCGATGGAAATATTACTGAAGAAGCT GTACGTGAGGAGAATGGCTGCAGATATGGGGATAACTAGAATTCATGCTTCAGGGAAGATGGTTGGGATGAAAACAAATATGAACAAGGGAGTTTTCAAA CTATTGACCGACTCGATGTCTTCAAATGCTCGTAGGAACAAATTGGTCCTTGAAGGAGACGTAATAAAGGCGGAATTGCTGCTGGAGCTACAGAGTGAAC AACTTCTAAACTGGGTATTCCAGTGCTTGTCAGAACTCCATGCTTGTTTGCCTTCCGTCATGAAATACTAA
AA sequence Show only first row Show all	>Lus10041506 pacid=23146596 polypeptide=Lus10041506 locus=Lus10041506.g ID=Lus10041506.BGIv1.0 annot-version=v1.0 MASLDVCSSSSSFISTLHTLPNQLRTGNLFHLKCPSSHRFLSSSPFSVVLASSLHVPSATSAAAIPSPARYRPGADTVDDGNDPISLLNLRIHSTRSTRD DSSSSSSSSSFRPAMDPQEADKYIQLVKEQQQRGLQKLKGDRQTNSGGGFSYKGDPYTLGAGDYVVHRKAGIGKFVAIKFDLPNNSSRSEPIEYVFLEYA DGMAKLPLHQASRLLYRYNLPNESKKPKTLSKLSDPGAWEKRKTKGKVAIQRMVVDLMELYLHRLKQRRPPYPKSPDMAGFDAQFPYNPTPDQKQHFPSP LHGLDNMFQAFIDVERDLTERQTPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMILAPTIVLAKQHFDVISERFSRYPNIKVGLLSRFQTRTEKMTYL GMIERGELNIVIGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASLKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIRTHLSPYNEG KVALAIQNELDRGGQVFYVLPRIKGLEEVHDFLDRSFPDVKIATAHGKLYSKQLEETMEKFAYGEIKILICTNIVESGLDIPNANTIIIQDVQFFGLSQL HQLRGRVGRADKEAHAYLFYPDKSSLTEQALERLQAMEECVDLGQGFQIAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHCVVSVPY KSVQVDLNVTPRHTSEYINFLDNPIEIIEEAEKAAEKDIWSLVQFTENLRRQYGKEPYSMEILLKKLYVRRMAADMGITRIHASGKMVGMKTNMNKGVFK LLTDSMSSNARRNKLVLEGDVIKAELLLELQSEQLLNWVFQCLSELHACLPSVMKY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	0	1
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	2.0	0.8609
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	3.5	0.8323
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10020503 [exp]	8.5	0.8244
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	9.1	0.8387
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	13.2	0.8260
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	17.7	0.8102
AT4G13150			unknown protein		Lus10038175 [exp]	19.2	0.8117
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	20.1	0.8221
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	20.5	0.7539
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	20.7	0.8376

Compare expression of checked genes

Lus10041506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.