Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 100 / 5e-27 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012586 [exp] 125 / 2e-37 AT5G13930 230 / 1e-73 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 94 / 1e-25 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 96 / 4e-25 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 74 / 2e-17 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 74 / 4e-17 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 68 / 4e-15 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145100 [exp] 102 / 8e-28 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 94 / 1e-24 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 92 / 7e-24 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 91 / 9e-24 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 91 / 1e-23 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 89 / 7e-23 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 85 / 3e-21 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 71 / 2e-16 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041507 pacid=23147007 polypeptide=Lus10041507 locus=Lus10041507.g ID=Lus10041507.BGIv1.0 annot-version=v1.0 ATGGCGGGTGCAGGAGGAGCCAAGGTAGTGGAGATCCGAGCGGCTCAGCGAGCGAGTGGACCGGCCACGGTTCTGGCCATAGGAACTGCAACCCCGCAAA ACTGCGTCATCCAGGCCGACTACCCTGACTACTACTTCCGCATCACCAACAGCGAGCATATGTCCGACCTCAAGCTCAAATTCAAACGCATGTATTTCTA A
AA sequence Show only first row Show all	>Lus10041507 pacid=23147007 polypeptide=Lus10041507 locus=Lus10041507.g ID=Lus10041507.BGIv1.0 annot-version=v1.0 MAGAGGAKVVEIRAAQRASGPATVLAIGTATPQNCVIQADYPDYYFRITNSEHMSDLKLKFKRMYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	1.0	0.9935
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	1.4	0.9607
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	1.7	0.9386
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	2.0	0.9166
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	2.2	0.9038
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	2.8	0.8611
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031283 [exp]	5.5	0.8862
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	5.9	0.8613
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	8.8	0.7505
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	8.9	0.8492

Compare expression of checked genes

Lus10041507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.