Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 451 / 1e-159 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 197 / 4e-60 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 196 / 8e-60 Chalcone and stilbene synthase family protein (.1) AT1G02050 174 / 5e-51 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G34520 56 / 1e-08 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34510 50 / 9e-07 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT3G52160 48 / 5e-06 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT1G71160 48 / 7e-06 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT4G34250 47 / 1e-05 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT2G16280 47 / 2e-05 KCS9 3-ketoacyl-CoA synthase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 454 / 2e-159 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 334 / 4e-113 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 332 / 2e-112 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 329 / 2e-111 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011744 [exp] 280 / 1e-95 AT5G13930 283 / 4e-96 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10012586 [exp] 255 / 5e-84 AT5G13930 230 / 1e-73 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 196 / 2e-59 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 194 / 5e-59 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 193 / 3e-58 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051500 [exp] 458 / 4e-162 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 456 / 1e-161 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 456 / 2e-161 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 454 / 1e-160 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 451 / 1e-159 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 449 / 8e-159 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 334 / 2e-113 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 327 / 8e-112 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 313 / 3e-105 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 203 / 8e-62 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041508 pacid=23146868 polypeptide=Lus10041508 locus=Lus10041508.g ID=Lus10041508.BGIv1.0 annot-version=v1.0 ATGCCCGCCAGGACTTGGTGGTCGTGGAAGTCCCAAAACTCGGGAAAGAAGCCGCCACCAAGGCAATCAAAGAGTGGGGCCAGCCCAAATCCAAAATCAC CCACCTCGTATTCTGCACCACTTCCGGCGTCGACATGCCACACCACTTCCGGAGTCGACATGCCAGGCGCCGACTACCAGCTCACCAAGCTCCTCGGCCT CCGCCCTTCCGTCAAGCGCTTCATGATGTACCAGCAAGGCTGCTTTGCCGGCGGCACCGTCCTCCGCATGGCCAAGGACCTCGCCGAGAACAACAAGAAC GCCCGCGTCCTCGTCGTCTGCTCCGAGATCACCGCCGTCACCTTCCGGGGACCTTCCGACACCCACCTCGACTCCCTTGTCGGACAGGCTCTGTTCGGAG ACGGAGCCGCCGCTGTCATCGTCGGCGCCGACCCTGACCTGACCGTCGAGAATCCGATGTTCGAGCTGGTGTCGGCGGGGCAGACGATACTCCCGGACTC GGAGGGGGCCATCGACGGCCACCTGAGGGAAGTGGGGTTGACTTTCCACTTGTTGAAAGACGTGCCCGGGTTGATTTCCAAGAACATCGAGAAAAGTCTG GTGGAGGCGTTTAAGCCGTTGGGAATCAGTGACTGGAACTCGCTGTTCTGGATAGCTCACCCCGGTGGGCCTGCTATTCTGGACCAGGTTGAGGAGAAGC TTGGGCTTAAGCCCGAGAAGATGCGGGCCACGAGGGAGGTGTTGAAAGAATACGGCAACATGTCGAGCGCGTGCGTTCTGTTTATAATGGATGAGATGAG GAAGAAGTCGGCGGAGGAAGGGAAGTTGACCAACGGGGAAGGGCTGGAGTGGGGTGTGCTGTTCGGGTTCGGACCTGGACTCACCGTCGAGACTGTCGTG CTTCACAGCCTTCCCACCGCCAAACAACCGGCGGTGGTTGGTGGTGCTAATAATGGGAATGGCGTCGTTACTACCGCTGTCGCTGTTAGTAATTAA
AA sequence Show only first row Show all	>Lus10041508 pacid=23146868 polypeptide=Lus10041508 locus=Lus10041508.g ID=Lus10041508.BGIv1.0 annot-version=v1.0 MPARTWWSWKSQNSGKKPPPRQSKSGASPNPKSPTSYSAPLPASTCHTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNKN ARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGADPDLTVENPMFELVSAGQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL VEAFKPLGISDWNSLFWIAHPGGPAILDQVEEKLGLKPEKMRATREVLKEYGNMSSACVLFIMDEMRKKSAEEGKLTNGEGLEWGVLFGFGPGLTVETVV LHSLPTAKQPAVVGGANNGNGVVTTAVAVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	1.4	0.9607
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	2.0	0.9537
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	2.0	0.9150
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	2.4	0.9338
AT2G36885			unknown protein		Lus10013829 [exp]	2.4	0.8943
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	3.9	0.8965
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	7.3	0.8516
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	11.0	0.8455
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	11.3	0.8548
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	11.8	0.8559

Compare expression of checked genes

Lus10041508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.