Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26700 468 / 2e-165 Protein kinase superfamily protein (.1) AT3G24550 200 / 2e-58 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 197 / 2e-58 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 200 / 4e-58 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT2G02800 191 / 7e-57 Kin2, APK2B protein kinase 2B (.1.2) AT1G09440 191 / 2e-56 Protein kinase superfamily protein (.1) AT5G18500 190 / 1e-55 Protein kinase superfamily protein (.1.2) AT3G24790 186 / 1e-55 Protein kinase superfamily protein (.1) AT5G38990 195 / 2e-55 Malectin/receptor-like protein kinase family protein (.1) AT4G34440 193 / 2e-55 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012585 [exp] 659 / 0 AT3G26700 426 / 2e-149 Protein kinase superfamily protein (.1) Lus10002882 [exp] 315 / 3e-105 AT3G26700 323 / 3e-108 Protein kinase superfamily protein (.1) Lus10016021 [exp] 193 / 9e-58 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10013014 [exp] 191 / 1e-56 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10023645 [exp] 196 / 3e-56 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10019237 [exp] 197 / 4e-56 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10011098 [exp] 194 / 6e-56 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10034082 [exp] 194 / 1e-55 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10021003 [exp] 189 / 3e-55 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144800 [exp] 519 / 0 AT3G26700 439 / 3e-154 Protein kinase superfamily protein (.1) Potri.002G237600 [exp] 509 / 0 AT3G26700 445 / 2e-156 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 194 / 3e-57 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G214200 [exp] 192 / 1e-56 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G009300 [exp] 189 / 3e-56 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G093700 [exp] 189 / 3e-56 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.011G164700 [exp] 195 / 2e-55 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.017G110400 [exp] 193 / 3e-55 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 193 / 3e-55 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.008G145900 [exp] 185 / 3e-55 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041509 pacid=23146824 polypeptide=Lus10041509 locus=Lus10041509.g ID=Lus10041509.BGIv1.0 annot-version=v1.0 ATGTCAAGGACTCTTGCAGGCATCCTAGGAGGTGCAGGAACCTTGGCATTATTGGTTGTGATATTTTTTGCCTATCTAATATGGACCAAATTATGCGTCT CCAAACGCAATAGTGTCTCCAGAACCTCCGACACTGGATCTTCTGATCCATCTCTTCAAGCTGGAAGACATGCTGGGGGTGAGCTGTCAATACATGAGGC TAAGCGCTTTGTTATGGAAGAACTGTCTCTGGCTACCAAATTTTTTAGCCACAAGAACTTGATCGGTGTAGGCAAATTCGGAGAGGTATACAAGGGTTTG CTTGAAAATGGGATGCTTGTAGCTGTGAAAAAACGATTTGGAGCACCGACTCAAGATTTTGTTGATGAGGTACGGTATCTTTCGTCTATTCAGCATCGCA ACATAGTGACTCTGTTGGGTTACTGTGAGGAGAACACAATGCAGTTCCTCATCTATGAATATGTACCCAGTGGGAGCGTTTCCAGTCACTTGTACGGGTC TGGCCAAGTATCAAAGGAGAAGCTGGAATTCAAACATAGACTCGCAATAGCTCTAGGGGCAGCTAAAGGTCTGGATTATCTTCACTCCCTGAGACCTCGC TTAGTGCACAAGAATTTCAAGACGGCTAACGTGCTGGTGGACGAGAATTTCATAGCTAAGGTTGCAGATGCAGGGCTGCGGAATTTCCTGGGAAGAGTTG AAAGTACTGCAGGCCCTTCTTCCCAAGTGACTGCAGATGAGATATTTCTTGCGCCAGAGGTGAGGGAGTTCAGACGATTCTCGGAGAAAAGTGATGTGTA CAGTTTCGGTGTGTTTCTTGTGGAGTTGATCACCGGAAGGGAAGCAACAGAAGAGAATATGGTGGAATGGGTGGAAAGCAACGGAAGGGAGGAGGGTATT AGCAGAGTTGAGGGGAGGATGGTGGATGAGAGGTTGGGGAGCAGCTTCACGGCGGAAGGGATGGAAGAGCTGATGAAGTTGGCAGAGCGGTGCTTGGAGG CCTCGAGTGAGAGGAGGCCCGGGATGAGCAATGTGGTGATGGAGCTGGACAGAATTCTGGAGAAAGAGATGAAAGTGACTACTGGTATGGGAGAAGGTAC TGCTCCAACTGTGACTCTGGGAAGCCAGTTATTCAGGCCTTAA
AA sequence Show only first row Show all	>Lus10041509 pacid=23146824 polypeptide=Lus10041509 locus=Lus10041509.g ID=Lus10041509.BGIv1.0 annot-version=v1.0 MSRTLAGILGGAGTLALLVVIFFAYLIWTKLCVSKRNSVSRTSDTGSSDPSLQAGRHAGGELSIHEAKRFVMEELSLATKFFSHKNLIGVGKFGEVYKGL LENGMLVAVKKRFGAPTQDFVDEVRYLSSIQHRNIVTLLGYCEENTMQFLIYEYVPSGSVSSHLYGSGQVSKEKLEFKHRLAIALGAAKGLDYLHSLRPR LVHKNFKTANVLVDENFIAKVADAGLRNFLGRVESTAGPSSQVTADEIFLAPEVREFRRFSEKSDVYSFGVFLVELITGREATEENMVEWVESNGREEGI SRVEGRMVDERLGSSFTAEGMEELMKLAERCLEASSERRPGMSNVVMELDRILEKEMKVTTGMGEGTAPTVTLGSQLFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26700			Protein kinase superfamily pro...		Lus10041509 [exp]	0	1
AT4G34810			SAUR-like auxin-responsive pro...		Lus10026294 [exp]	2.0	0.9237
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	9.2	0.9109
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	11.3	0.9055
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	12.0	0.9044
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	13.7	0.9075
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	14.0	0.8843
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	15.9	0.9021
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	18.0	0.8985
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	18.0	0.8902
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	18.1	0.8989

Compare expression of checked genes

Lus10041509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.