Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 552 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 542 / 0 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012584 [exp] 816 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012581 [exp] 553 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 533 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 525 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 518 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 66 / 4e-11 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144500 [exp] 635 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.002G237700 [exp] 583 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 557 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10041510 pacid=23146655 polypeptide=Lus10041510 locus=Lus10041510.g ID=Lus10041510.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAGAAGGATATAATAAGATTGGAGAGGGAATCGGTGATTCCAATTGTGAAGCGCAAGATCGTTGCTGCTTTATCCAACCGCATTGAGG GGAAGAAGGAGAAGGAGGAGTTCGGGAGGCTATGTCAGAGGGCGGAATACACGATCAGGGCATGGTACCTTCTCCATTTCGAGGAGATGATGCAGCTCTA CGCATTGTTCGAGCCCGTCCATGGAGACCGCAAGATCGAGCAGCAGAACCTCACCCCTGAGGACGTCGACATCTGCGAGCGCAACTTCCTCAACTGCCTC TTCCAGATCATGGAACGCAGCAATTTCAAGGTCACCACCGACGCCGAGATCGAGCTGGACAAGAGGATGTTCACCAGGTACTTTACCAAGTACCCCAAGG ATAACCTACCTTATTTCGCCGACAAGTTCATCATATTCAGGCGAGGGTTCGGGATTGATCACATGGAAGCTTACTTCATCAAACATAAGATCAATACCAT CATCATTCGTATATGGATGTTCCTCCTCCTCATTACCGGGCTGAAATGGCTATTGTTTCCAAAGAAGGCAAAGAAGCCTAGTCCAAAACCAGCAGCGGTA GTACCAGAACCATCTAATGAGGGGGAGCCTAATCCTGTTGGAGTCAGCATTGATGTGTATAATGACGATAGCAGCGACAGCGACGACGATGAAGATCTCT TCGTGGAACGAATTCGCATCGAGAAAATGCCACTCAGCTTCCTGAATCTTTTTGGGAAAGTAACCATCCAAGAGCCCACCTTCGATCGTATCATTGTTGT TTACAGGAGAGTTAGCAGCTGCGACAAAAAGGAAACGGAGAAGAATATTTACGTTAAGCACTTCAAGGGAATACCCATGGCAGATATGGAGATCGTACTG CCAGAGAAGAAGAACCCAGGGCTAACCCCAATGGACTGGGTGAAGTTCCTTGTATCCGCCCTCATCGGTCTGGGAACGGTGATTGGGTCCTTGAGTGTGC CGAAAGCTGACATCAGGGTGATCTTCGCCATCCTCACATCAGTGGTTGGCTACTGCGTCAAAACGTATTTCACCTTCCAGAGTAACTTGGTGTCTTATCA AAGTCTGATCACCCAGTCAGTGTATGATAAACAACTGGATAGTGGGAGGGGCACTCTGCTTCACTTGTGCGATGAGGTCATTCAACAGGAAGTGAAAGAG GTTATTATATCCTTCTTCATCCTGATGGAGCAAGGAGATGCCACAAGACAGGAGCTAGACCAAAGGTGTGAAGATATGATCAAGGCAGAATTCGGCGAGA ACTGCAACTTCGATGTTGACGATGCTCTCCAGAAGCTAGAGAAACTCGGTGGAAAGTACAGCTGCGCTGGATTGAAGGAAGCCAACGATATTATCGGCAC CACCACTGAGGAGGTGGTTCTTAAGGCTACAGGGGGTGCTTCTCTTTTCAGCGACTTCACCGCAAACCTTCTCGAATATTAA
AA sequence Show only first row Show all	>Lus10041510 pacid=23146655 polypeptide=Lus10041510 locus=Lus10041510.g ID=Lus10041510.BGIv1.0 annot-version=v1.0 MGKKKKDIIRLERESVIPIVKRKIVAALSNRIEGKKEKEEFGRLCQRAEYTIRAWYLLHFEEMMQLYALFEPVHGDRKIEQQNLTPEDVDICERNFLNCL FQIMERSNFKVTTDAEIELDKRMFTRYFTKYPKDNLPYFADKFIIFRRGFGIDHMEAYFIKHKINTIIIRIWMFLLLITGLKWLLFPKKAKKPSPKPAAV VPEPSNEGEPNPVGVSIDVYNDDSSDSDDDEDLFVERIRIEKMPLSFLNLFGKVTIQEPTFDRIIVVYRRVSSCDKKETEKNIYVKHFKGIPMADMEIVL PEKKNPGLTPMDWVKFLVSALIGLGTVIGSLSVPKADIRVIFAILTSVVGYCVKTYFTFQSNLVSYQSLITQSVYDKQLDSGRGTLLHLCDEVIQQEVKE VIISFFILMEQGDATRQELDQRCEDMIKAEFGENCNFDVDDALQKLEKLGGKYSCAGLKEANDIIGTTTEEVVLKATGGASLFSDFTANLLEY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19340			Protein of unknown function (D...		Lus10041510 [exp]	0	1
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	4.4	0.7190
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	11.2	0.6826
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	17.1	0.6574
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	22.6	0.5839
AT1G21550			Calcium-binding EF-hand family...		Lus10040888 [exp]	24.2	0.5590
AT4G24700			unknown protein		Lus10017951 [exp]	41.2	0.6316
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	42.9	0.6070
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	43.6	0.5604
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	61.5	0.5771
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	65.2	0.5496

Compare expression of checked genes

Lus10041510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.