Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 708 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 539 / 0 aminopeptidases (.1) AT2G46915 74 / 1e-13 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012581 [exp] 874 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 790 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 783 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 523 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 509 / 5e-178 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 147 / 3e-38 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10010092 [exp] 68 / 1e-11 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10007214 [exp] 63 / 3e-10 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 751 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 728 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 598 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.002G183900 [exp] 65 / 6e-11 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10041512 pacid=23147024 polypeptide=Lus10041512 locus=Lus10041512.g ID=Lus10041512.BGIv1.0 annot-version=v1.0 ATGGAACCCTTCATCCCAATTCTTAACCCCAAGCTCATCATGCCCTTAGCCAATCTCATCGAACACAGCTCTGACCGTGCCGAGTTCCTTAAGCTCTGCA AGCGAGTTGAGTACACTATTCGAGCCTGGTACCTTCTCCAGTTTGAAGATCTCATGCAACTGTATTCTCTGTTCGACCCTGTGTCTGGAGAAGAGAAATT GAAACAACAGCACCTCACTTCAGATGATATCCTTACACTCGAACAGAATTTCCTTACCTATTTGTTTCAGGTGATGGAAAAGAGTAACTTCAAAATAGCA ACTGATGAGGAGATTGAAATTGCTCTCTCTGGCCAGTATCTTTCTAATCTCCCAATAAAGGTGGACGAGTCCAAGCTTGACAAGAAGCTTTTGACCACTT ATTTCAAGAACCATGCTCATTCCAACCTTCCAGATTTTGCAAACAAGTATGTTATCTTTCGTCGTGGCATTGGAATTGATCAAACAACTGGCTATTTTTT CATGGAGAAAGTAGACATGCTTATCGGTCGTTTTTGGGCATATCTCTTAAGGGTTACGAGGTTGGGGAAATTTCTCTCGCGAAAGCCTAAAAAACAACGG AGAGACCCAACGAAAGATGACGACAATAGTTCCGAAGACAACAAGGACGAATTTTTTGTGGAACGCATCCGCCTTGAAAATATGGAACTTAGCTTGGGGA ATTTGCTGAGCAAGACAACAATTCAAGAGCCTACGTTCGACAGGATAATAGTTGTTTATAGGCGAGCAAGTACCAAGGAAAAACTAGAACGTGGAGTGTA TGTAAAGCATTTCAAAAACATACCAATGGCTGATATGGAAATAGTTCTTGTAAGATTCTCTCCCCGTGCTCACCCAGAAAAGAGAAACCCTGGGTTAACT CCAATGGACTGGGTGACGTTCTTAGTTTCTGCTATAGTGGGACTGGTTGCTGTAGTTAGTTCTATTGAATCACCCAAGGACGATCTCTGGGTTATGTTTG CTGTCCTCTCAACAGTTGTTGGCTACTGTGCCAAGACATACTTCACTTACCAGCAAAACTTGGCTGCATATCAAAACTTGATCACCCAGTCTATGTATGA CAAACAGCTAGACAGTGGGAAGGGCACTCTTCTTCACCTGTGTGACGATGTAATTCAGCAAGAAGTGAAAGAGGTGATTATTTCATTCTTCATATTGATG GAACAAGGCAAGGCTACTAGGGAGGATCTAGATTTGCGGTGCGAGGAATTACTAAAAGAAGAGTTTGGGGAGAGCTGTAATTTCGATGTAGACGATGCAG TAGAGAAACTGGAGAAGCTTGGCATTGTTGCTAGGGATTCCCTTTCGAGGTACTACTGCGTAGGGCTGAAAAGGGCTAATGAGATAATTGGCACCACCAC CGAAGAAGTAGTCCTCAAGGCGAAGCAGGGTATGGTCTTGGTGCGCAAATTGACTCGAACTTCGTCGTTACTTCTTTAG
AA sequence Show only first row Show all	>Lus10041512 pacid=23147024 polypeptide=Lus10041512 locus=Lus10041512.g ID=Lus10041512.BGIv1.0 annot-version=v1.0 MEPFIPILNPKLIMPLANLIEHSSDRAEFLKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVSGEEKLKQQHLTSDDILTLEQNFLTYLFQVMEKSNFKIA TDEEIEIALSGQYLSNLPIKVDESKLDKKLLTTYFKNHAHSNLPDFANKYVIFRRGIGIDQTTGYFFMEKVDMLIGRFWAYLLRVTRLGKFLSRKPKKQR RDPTKDDDNSSEDNKDEFFVERIRLENMELSLGNLLSKTTIQEPTFDRIIVVYRRASTKEKLERGVYVKHFKNIPMADMEIVLVRFSPRAHPEKRNPGLT PMDWVTFLVSAIVGLVAVVSSIESPKDDLWVMFAVLSTVVGYCAKTYFTYQQNLAAYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILM EQGKATREDLDLRCEELLKEEFGESCNFDVDDAVEKLEKLGIVARDSLSRYYCVGLKRANEIIGTTTEEVVLKAKQGMVLVRKLTRTSSLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	0	1
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	1.4	0.8668
AT1G55535			unknown protein		Lus10021858 [exp]	1.4	0.8626
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	3.0	0.8427
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	5.3	0.8336
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	6.3	0.8224
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	8.1	0.8278
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	8.5	0.8229
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	11.2	0.7829
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	11.5	0.7911
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	12.0	0.7863

Compare expression of checked genes

Lus10041512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.