Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 743 / 0 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G35160 332 / 9e-103 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 324 / 4e-100 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G04940 298 / 2e-91 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 292 / 5e-89 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 272 / 1e-81 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 267 / 6e-80 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 226 / 2e-64 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 218 / 6e-61 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 121 / 6e-30 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031984 [exp] 927 / 0 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 897 / 0 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 426 / 6e-141 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 398 / 7e-131 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 320 / 3e-98 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 323 / 1e-97 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 322 / 3e-97 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 296 / 3e-90 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 291 / 1e-88 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237950 [exp] 828 / 0 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 824 / 0 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 568 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 352 / 1e-108 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 291 / 5e-89 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 285 / 1e-86 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 284 / 5e-86 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 281 / 4e-85 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 281 / 2e-84 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 276 / 4e-83 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10041515 pacid=23146589 polypeptide=Lus10041515 locus=Lus10041515.g ID=Lus10041515.BGIv1.0 annot-version=v1.0 ATGGTGGTTCCTTCTTTGCAAATCGTCACCGATGGAGTTCCTACTTCCCTGGTCACCCCTGCATCCAAATCTACACCCGCTGTCGACAATCCCCCTCCAA AGAGGCGCTCTAGTGTCCGTATTCAGGCCATAAAGCGTCTCGAGAAGGAGGAACTCGTTCGGAAGCGGACTCAACTTCTGGATGACTCAAAGGAAGAAGT ACCGACTAAAAGGCCTCCCGCCAAGAGATCTCGGGAAGAACATGGTCCGCCGGTGGTTAAAGACGGAAACGATCTGACCGGGGTGGTACTGAACGATGAC CAGCAGGCAGTGCAGGGAGAACAGTTGAAGAAGGCGGAGAAGGAGGCTGAGATTGGTGACGTAGCCATCCAGACGGCTCCAGAGTTTCCGTCCGCCGACG GTGGCCAGGCCCAGGCCTCTGGTAAGAGTGCCCATGCTATAGTCACCGACACTGTGAGGCTTTTCAACAAGTACTATCTTCACTTTGTGCAGGAAGAGAG AGCTTCTAAACCTGACGGTAAATCAACTTCAAAACGTCCTGATCTTAAGGCAATAACTAAAATGTTGAATACTGGTGCGGTAATGTACCCAAAGAAAAGA ATTGGGGACCTTCCAGGCATTGATGTTGGGCACCAATTTTATGGAAGATGTGAGATGGTTGCTATTGGGTTCCATGGCCACTGGTTGAATGGTATTGATT ATATGGGTGCTACCTACCGAAAGGAGTACAAGAACTACACATTACCAATCGCTGTAGCTATTGTTTTGTCAGGCATGTATGAGGATGATCATGATAATGC TGATGAAGTGACATACACTGGTCAAGGTGGCCATAATTTAACTGGGGACAAGCGTCAGATTAAGGATCAAGTTTTGGAGCGTGGAAATTTGGCACTCAAG AACTGTGTTGACCAATCTATACCTGTACGAGTGATTCGTGGCCACGTGTGCAAGAGCAGTTATTCTGGAAGGATCTATACATATGACGGTTTGTATAAGG TTGTTCATTTTTGGGCGGAAAAGGGCATATCTGGATTTACGGTGTACAAGTTTAAGCTTCGGCGGCTTGAAGGGCAACCAATATTGACGACTAATCAGGT ACACTTCACTAACGGACGTGTTCCTCAGGCTATATCTGAAATTCGAGGGTTGGTATGCAATGATATTACTGGCGGACTTGAGGATCTCCCAGTTCCAGCT ACAAATTTGGTTGATGATCCACCTGTTCCGCCAACAGGCAAGTTGAAACTTCGTTTCACTTATCTGAAGTCTATTCGAGTATCCAAGAATGTGAAGCTCC CAACAAACACTGCCGGATGCAATTGCAAAGGAACCTGTGTGGATTCCAGGACATGTGCTTGTGCAAAGCTTAACGGCTCAGATTTTCCATATGTGCATCG CGATGGTGGCAGGCTAATTGAGGCACGGGATGTTGTATTTGAATGTGGTCCATCTTGCGGATGTGGACCAGGCTGCGTTAACAGAACATCTCAGAGGGGA CTGAGGCATCGTCTTGAGGTGTTCCGCACTCCTAAGAAGGGCTGGGCTGTGAGATCATGGGATTTCATTCGTTCTGGGTCGCCGGTTTGTGAGTATGTTG GAGTGCTCAAGAAAACAGAAGATGTTGATTCACTCACAGTAAACGATTATATTTTTGACATCGACTGCTTACAGACGATGCGAGGGTTGGAAGGGAGGGA GAGGCGTTTACGTGATGTATCACTGCCAGTTGGTGAACAAGGCACTGCATTAGAGGAGTCAAAATCTGACAGTGGACCTGAGTTCTGCATCGATGCAGGT CCCAGTGGAAATGTAGCTAGGTTCATTAACCATAGCTGCAGTCCGAATCTGTTTGTCCAGTGTGTCCTAAGCTCCCATCAAGATGTTCGGCTTGCCCGTG TAGTGTTGTTTGCCGCCGACAACATTCCTCCTTTGCAGGAGCTGACGTATGACTATGGGTATGTGCTTGATAGTGTAATGGGACCTGATGGCAACATAAA ACGGCTTGCATGCTATTGCGGTGGAGCTGATTGCAGAAAGCGCTTGTATTAG
AA sequence Show only first row Show all	>Lus10041515 pacid=23146589 polypeptide=Lus10041515 locus=Lus10041515.g ID=Lus10041515.BGIv1.0 annot-version=v1.0 MVVPSLQIVTDGVPTSLVTPASKSTPAVDNPPPKRRSSVRIQAIKRLEKEELVRKRTQLLDDSKEEVPTKRPPAKRSREEHGPPVVKDGNDLTGVVLNDD QQAVQGEQLKKAEKEAEIGDVAIQTAPEFPSADGGQAQASGKSAHAIVTDTVRLFNKYYLHFVQEERASKPDGKSTSKRPDLKAITKMLNTGAVMYPKKR IGDLPGIDVGHQFYGRCEMVAIGFHGHWLNGIDYMGATYRKEYKNYTLPIAVAIVLSGMYEDDHDNADEVTYTGQGGHNLTGDKRQIKDQVLERGNLALK NCVDQSIPVRVIRGHVCKSSYSGRIYTYDGLYKVVHFWAEKGISGFTVYKFKLRRLEGQPILTTNQVHFTNGRVPQAISEIRGLVCNDITGGLEDLPVPA TNLVDDPPVPPTGKLKLRFTYLKSIRVSKNVKLPTNTAGCNCKGTCVDSRTCACAKLNGSDFPYVHRDGGRLIEARDVVFECGPSCGCGPGCVNRTSQRG LRHRLEVFRTPKKGWAVRSWDFIRSGSPVCEYVGVLKKTEDVDSLTVNDYIFDIDCLQTMRGLEGRERRLRDVSLPVGEQGTALEESKSDSGPEFCIDAG PSGNVARFINHSCSPNLFVQCVLSSHQDVRLARVVLFAADNIPPLQELTYDYGYVLDSVMGPDGNIKRLACYCGGADCRKRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	0	1
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	1.7	0.9671
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	2.4	0.9584
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	2.8	0.9534
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	3.5	0.9555
AT2G43990			unknown protein		Lus10008351 [exp]	5.5	0.9529
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	6.0	0.9582
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	6.8	0.9649
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	10.8	0.9286
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	12.1	0.9481
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	12.7	0.9529

Compare expression of checked genes

Lus10041515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.