Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13980 1322 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 1160 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 997 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 148 / 5e-36 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012577 [exp] 1849 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10035111 [exp] 1488 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 1457 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1118 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 810 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 660 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10014507 [exp] 204 / 8e-54 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10039457 [exp] 144 / 1e-34 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 125 / 1e-28 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143600 [exp] 1452 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 1263 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1167 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.007G056300 [exp] 1055 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.017G073900 [exp] 214 / 6e-57 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.001G350400 [exp] 147 / 8e-36 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 77 / 5e-10 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.008G117400 [exp] 60 / 3e-09 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10041516 pacid=23147004 polypeptide=Lus10041516 locus=Lus10041516.g ID=Lus10041516.BGIv1.0 annot-version=v1.0 ATGGTGAAGATTGAGCTAAGCCTAACGCCATGGCGGCTGTTCACTCCTGCTGCTATTGCTTACACGATTTTGCTTTCGATTGTAGTAATTCAATGCGGGG AATCCAAGTACATAGCCTACAACACTTCCCAGGGCATAGTCCCCGGTAAGCTCAACGTTCACTTGGTTCCTCATACACATGATGATGTTGGTTGGCTCAA GACTGTTGACCAGTACTACGTTGGCTCCAACAATTCAATCCAGGGTGCCTGCGTGCAGAACGTTCTGGATTCCCTCATTCCGGCATTGCTAGCTGACAAG AATCGCAAGTTCATCTATGTCGAAATGGCATTTTTCGAACGATGGTGGAATGAACAAAGTGAACCAATGAAGCACACTGTCAAGCAGCTTGTAGCCTCGG GTCAGCTAGAATTCATAAATGGGGGTATGTGCATGCACGATGAGGCCGTGACCCATTACATTGACATGGTGGACCAAACAACCCTTGGTCATCGGTTCCT CAAAAGGGAATTTGGTGTTACACCAAGGGTTGGTTGGCAAATTGACCCTTTTGGACATTCTGCTGTCCAGGCTTATTTGTTGGGAGCTGAAGTTGGTTTC GACTCTCTTTTCTTCGGTCGGATAGATTACCAGGACAGAGAAAAGCGTAAGGGTGAGAAGAGTCTGGAAACTATCTGGCAGAGTTCCAAAAGTCTTCCTG CATTGAAGATTTTTGCTGGTGCATTCCCGACGAACTATGAGCCTCCACCTGGTGATTTCTACTTTGAAGTCAACGATGCCTCTCCTGTTGTGCAAGATGA CATCAATTTGTTTGATTACAATGTTCCGGAACGAGTAAATGACTTTGTTGCTGCTGCTATATGGCAGGATGGACGTGTGAATGCTATGTACTCTACCCCA TCCATATATACTGATGCCAAGCATTCTGCAAAAGAGACCTGGCCGCTAAAGACTGGTGACTTTTTCCCTTATGCAGATCGTGCAAATGGTTTCTGGACAG GATACTTCTCAAGTCGACCAGCCTTGAAACGTTATGTTAGAGTGATGAGTGGCTATTACTTGGCTGCAAGACAACTGGAATTTCTGAAAGGACGAAGTAA CGTAGGGCCAAATACCAACTCATTGGCAAATGCAATGGCAATCGCTCAGCATCATGATGCCGTTACTGGAACAGAAAAGCAACATGTAGCTAATGATTAT GCCAAACGACTGGCAATTGGCTATGCAGAGGCTGAAAAGGTCGTTGCAACTTCACTCAGTTGCTTGTCCGAAGTCCATTCTCATGCAGGATGCCAGAGCA GTGTTATGGTGCTATACCTACCAACTTGCATTATTGTTCTTCATCAAGGGATTCATCGGTTGTGTGCATATGTAGTTATTAGTGATGATGTTGTCGTGCA TGACCCGGAGGGGAAAGAAGTTGAAGCTCAACTTGTTCCTCTAATGGAAGCCTATCTAAGTTTGAGGAACTTCCATGTTAAGGCTTACCTGGGTACAACG CCGGTAGGAACTCCCAAGTATTGGCTTGCCTTCAGAGTCTTGGTCCCTCCTTTTGGTTTCAGCTCCTATACAATCTCCAGTGCCAAAATTGCAGGTGCTC ACTCAACCAAACCATCTGTATACAAATCGAAAAGAAGCCGAAAATCTATTGTTGAACTGGGTCAAGGAGATCTTAAGCTCACCCGTTCATCTTTACAAGG GAAGCCATCTGGTTACTCGAACAGCAGGAGCTCTGTGAAGGAGCAAGTTCAGCAGTCTTTTAGTTACTATGGTGGATATAATGGAACCAACGACAAAAGT CCTCAGAATGGTGGGGCATACATCTTCCGACCAAATGGGACGTACCCCATTCAACCTGCAAAGCAGGTTCCTTTTACGGTTGTTAGCGGGCCAGTTGTAG AAGAAATACATGAACAGATCAACTCGTGGATATATCAGGTTACAAGATTATACAAAGGAAAAGAGCATGTTGAAGTTGAGTTTATAGTTGGTCCCATACC CACTGATGACGGCATTGGGAAAGAAGTTGTAACTCAAATCACAACTTCAATGGAAACCAATAAAACATTCTATACAGACTCTAATGGACGTGACTTTATC AAAAGGATTCGTGATTATAGATCAGACTGGGACCTGGAAGTGACTGAACCAGTTGCTGGAAATTATTACCCGATTAATCTGGGAATTTATGCCAAAGATG ACAAGAAAGAACTTTCCGTTCTTGTGGATCGGGCTCTTGCAGGAGGTAGCATAAAGGATGGACAAATAGAGCTACTACTCCATAGGAGACTCCTACTTGA TGATTCCAGAGGTGTTGATGAGGCTCTAAACGAAACAGTTTGCATTCAGGACAAATGCTCAGGATTAACGATCCAAGGAAAATACTACTACAGAATTGAC CCAATTGGAGAGGGTGCTAAGTGGCGTCGATCTTTCGGACAGCAGATATATTCACCCTTATTGCTAGCCTTTGCTGAAGAGGATGGAGATAAATGGACGA ACTCTCACGTAACAACATTTTCGGGATTGGCCCCCTCTTATAGTTTACCTGATAATGTTGCCGTCATAACCCTCCAGGAACTAGATGACGGGAAGGTGCT TCTTCGTTTAGCACATCTATACGAGGTTGGAGAGGACAAGGATCTGTCCGTGAAGGCAACTGTGGAACTAACGAAACTGTTCCCCGGAAAGAAGATAGGG CAGGTGGTGGAAATGAGCTTGTCTGCGAACCAAGATAAGGCAGAAATGGAGAAGAAAAGGCTTGTCTGGAAACCTGAACCATCATCATCATCATCTGAAG CAAGGAGACGGCAGATCGATTATGCGAAGCTTGAGGTTGATCTACTTCCAATGGAAATCCGCACCTTTCTCGTTGACATTGTCGCCGACACCTTTCAGGC AAAAGTTATGTGA
AA sequence Show only first row Show all	>Lus10041516 pacid=23147004 polypeptide=Lus10041516 locus=Lus10041516.g ID=Lus10041516.BGIv1.0 annot-version=v1.0 MVKIELSLTPWRLFTPAAIAYTILLSIVVIQCGESKYIAYNTSQGIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLADK NRKFIYVEMAFFERWWNEQSEPMKHTVKQLVASGQLEFINGGMCMHDEAVTHYIDMVDQTTLGHRFLKREFGVTPRVGWQIDPFGHSAVQAYLLGAEVGF DSLFFGRIDYQDREKRKGEKSLETIWQSSKSLPALKIFAGAFPTNYEPPPGDFYFEVNDASPVVQDDINLFDYNVPERVNDFVAAAIWQDGRVNAMYSTP SIYTDAKHSAKETWPLKTGDFFPYADRANGFWTGYFSSRPALKRYVRVMSGYYLAARQLEFLKGRSNVGPNTNSLANAMAIAQHHDAVTGTEKQHVANDY AKRLAIGYAEAEKVVATSLSCLSEVHSHAGCQSSVMVLYLPTCIIVLHQGIHRLCAYVVISDDVVVHDPEGKEVEAQLVPLMEAYLSLRNFHVKAYLGTT PVGTPKYWLAFRVLVPPFGFSSYTISSAKIAGAHSTKPSVYKSKRSRKSIVELGQGDLKLTRSSLQGKPSGYSNSRSSVKEQVQQSFSYYGGYNGTNDKS PQNGGAYIFRPNGTYPIQPAKQVPFTVVSGPVVEEIHEQINSWIYQVTRLYKGKEHVEVEFIVGPIPTDDGIGKEVVTQITTSMETNKTFYTDSNGRDFI KRIRDYRSDWDLEVTEPVAGNYYPINLGIYAKDDKKELSVLVDRALAGGSIKDGQIELLLHRRLLLDDSRGVDEALNETVCIQDKCSGLTIQGKYYYRID PIGEGAKWRRSFGQQIYSPLLLAFAEEDGDKWTNSHVTTFSGLAPSYSLPDNVAVITLQELDDGKVLLRLAHLYEVGEDKDLSVKATVELTKLFPGKKIG QVVEMSLSANQDKAEMEKKRLVWKPEPSSSSSEARRRQIDYAKLEVDLLPMEIRTFLVDIVADTFQAKVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	6.5	0.7496
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	7.5	0.7741
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	8.0	0.7976
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	9.2	0.7539
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	9.9	0.7264
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	9.9	0.7556
					Lus10006631 [exp]	10.5	0.7346
AT4G37420			Domain of unknown function (DU...		Lus10012255 [exp]	14.0	0.6835
AT5G52410			unknown protein		Lus10038854 [exp]	14.4	0.7550
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	18.2	0.7320

Compare expression of checked genes

Lus10041516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.